miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
414 3' -56.3 AC_000011.1 + 3902 0.66 0.515222
Target:  5'- aGCUgAGCCAccugcugggucagcUCGCCcaggcgcugggucaaGGCCUCgagcuggGCCAUCa -3'
miRNA:   3'- -UGAgUCGGU--------------AGCGG---------------UUGGAG-------CGGUAG- -5'
414 3' -56.3 AC_000011.1 + 14002 0.66 0.50439
Target:  5'- cCUcCAGCgggggcugCAUCGCC-GCCgcCGCCAUCg -3'
miRNA:   3'- uGA-GUCG--------GUAGCGGuUGGa-GCGGUAG- -5'
414 3' -56.3 AC_000011.1 + 4556 0.67 0.451836
Target:  5'- uGCccaGGCCGcCGCCcacgGGCCcaUCGCCAUCa -3'
miRNA:   3'- -UGag-UCGGUaGCGG----UUGG--AGCGGUAG- -5'
414 3' -56.3 AC_000011.1 + 16978 0.67 0.448777
Target:  5'- --gCAGCCGcCGCCGcaagaccaccacucGCCgcCGCCGUCg -3'
miRNA:   3'- ugaGUCGGUaGCGGU--------------UGGa-GCGGUAG- -5'
414 3' -56.3 AC_000011.1 + 11834 0.67 0.431664
Target:  5'- cGCUCAGCUcgCGCC-GCCU-GCUggCg -3'
miRNA:   3'- -UGAGUCGGuaGCGGuUGGAgCGGuaG- -5'
414 3' -56.3 AC_000011.1 + 30887 0.68 0.412028
Target:  5'- uUUguGCgCAUCGCCuACCUgCGCCAc- -3'
miRNA:   3'- uGAguCG-GUAGCGGuUGGA-GCGGUag -5'
414 3' -56.3 AC_000011.1 + 23782 0.69 0.345268
Target:  5'- aGCUCAGCCG-CGCCuACgaguugaaccucuuCUCGCCGc- -3'
miRNA:   3'- -UGAGUCGGUaGCGGuUG--------------GAGCGGUag -5'
414 3' -56.3 AC_000011.1 + 9954 0.69 0.330878
Target:  5'- cCUCGccgagcgcGUCGUCGCCGACCUggCGCuCGUCc -3'
miRNA:   3'- uGAGU--------CGGUAGCGGUUGGA--GCG-GUAG- -5'
414 3' -56.3 AC_000011.1 + 23950 0.7 0.298781
Target:  5'- uCUCuGCCG-CGCCAACCgcacccgCGCCGa- -3'
miRNA:   3'- uGAGuCGGUaGCGGUUGGa------GCGGUag -5'
414 3' -56.3 AC_000011.1 + 20549 0.71 0.235496
Target:  5'- cACUgGGCCA-CGUugUAGcCCUCGCCGUCg -3'
miRNA:   3'- -UGAgUCGGUaGCG--GUU-GGAGCGGUAG- -5'
414 3' -56.3 AC_000011.1 + 15941 0.75 0.14247
Target:  5'- gGCggcagCGGCCAUCGCCAGCaugucCGCCcgCg -3'
miRNA:   3'- -UGa----GUCGGUAGCGGUUGga---GCGGuaG- -5'
414 3' -56.3 AC_000011.1 + 23381 1.09 0.000388
Target:  5'- gACUCAGCCAUCGCCAACCUCGCCAUCu -3'
miRNA:   3'- -UGAGUCGGUAGCGGUUGGAGCGGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.