miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4143 5' -59.5 NC_001664.1 + 10519 0.66 0.735716
Target:  5'- cGAGCCugcgCCGCgCCUCgUCGCACAu-- -3'
miRNA:   3'- -UUCGGua--GGCG-GGAGaGGCGUGUcaa -5'
4143 5' -59.5 NC_001664.1 + 9011 0.66 0.70602
Target:  5'- -uGCCcgCCGUCUaucaacuuUCUCCGCACAu-- -3'
miRNA:   3'- uuCGGuaGGCGGG--------AGAGGCGUGUcaa -5'
4143 5' -59.5 NC_001664.1 + 77191 0.66 0.695985
Target:  5'- -uGCCAUCCGCaaggaUUCUUCGguUAGUUu -3'
miRNA:   3'- uuCGGUAGGCGg----GAGAGGCguGUCAA- -5'
4143 5' -59.5 NC_001664.1 + 2533 0.67 0.675762
Target:  5'- -cGCCGg-CGCCCUCgUCCGCGCcGg- -3'
miRNA:   3'- uuCGGUagGCGGGAG-AGGCGUGuCaa -5'
4143 5' -59.5 NC_001664.1 + 153615 0.67 0.675762
Target:  5'- -cGCCGg-CGCCCUCgUCCGCGCcGg- -3'
miRNA:   3'- uuCGGUagGCGGGAG-AGGCGUGuCaa -5'
4143 5' -59.5 NC_001664.1 + 8360 0.67 0.655397
Target:  5'- -cGCCGUCCGCCCcuauaccgUCgUCCGCucuuuCGGg- -3'
miRNA:   3'- uuCGGUAGGCGGG--------AG-AGGCGu----GUCaa -5'
4143 5' -59.5 NC_001664.1 + 3086 0.69 0.504446
Target:  5'- --aCUAUCCGCCCUCcCCgaGCACGGUc -3'
miRNA:   3'- uucGGUAGGCGGGAGaGG--CGUGUCAa -5'
4143 5' -59.5 NC_001664.1 + 154168 0.69 0.504446
Target:  5'- --aCUAUCCGCCCUCcCCgaGCACGGUc -3'
miRNA:   3'- uucGGUAGGCGGGAGaGG--CGUGUCAa -5'
4143 5' -59.5 NC_001664.1 + 2210 0.74 0.288777
Target:  5'- cGAGCCguccGUCCGCCCUCggugUCCGC-CAGg- -3'
miRNA:   3'- -UUCGG----UAGGCGGGAG----AGGCGuGUCaa -5'
4143 5' -59.5 NC_001664.1 + 153292 0.74 0.288777
Target:  5'- cGAGCCguccGUCCGCCCUCggugUCCGC-CAGg- -3'
miRNA:   3'- -UUCGG----UAGGCGGGAG----AGGCGuGUCaa -5'
4143 5' -59.5 NC_001664.1 + 1609 1.02 0.003014
Target:  5'- gAAGCCAUCCGCCCUCUCCGCACAGUUc -3'
miRNA:   3'- -UUCGGUAGGCGGGAGAGGCGUGUCAA- -5'
4143 5' -59.5 NC_001664.1 + 152690 1.02 0.003014
Target:  5'- gAAGCCAUCCGCCCUCUCCGCACAGUUc -3'
miRNA:   3'- -UUCGGUAGGCGGGAGAGGCGUGUCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.