miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4144 3' -61.8 NC_001664.1 + 8598 0.66 0.731015
Target:  5'- cGGGGGu-CUGCaaaaauGUCUGCGGAaaggucaaccgCCCGGc -3'
miRNA:   3'- -CCCCCuuGGCG------CAGACGCCUg----------GGGCU- -5'
4144 3' -61.8 NC_001664.1 + 2695 0.66 0.702831
Target:  5'- cGGcGGGAacGCCGCGggaUGCccggaGGACaCCCGc -3'
miRNA:   3'- -CC-CCCU--UGGCGCag-ACG-----CCUG-GGGCu -5'
4144 3' -61.8 NC_001664.1 + 153777 0.66 0.702831
Target:  5'- cGGcGGGAacGCCGCGggaUGCccggaGGACaCCCGc -3'
miRNA:   3'- -CC-CCCU--UGGCGCag-ACG-----CCUG-GGGCu -5'
4144 3' -61.8 NC_001664.1 + 4552 0.67 0.654893
Target:  5'- cGGcGGACCGCGguguuuUCUGCGGAa-CCGAc -3'
miRNA:   3'- cCCcCUUGGCGC------AGACGCCUggGGCU- -5'
4144 3' -61.8 NC_001664.1 + 155633 0.67 0.654893
Target:  5'- cGGcGGACCGCGguguuuUCUGCGGAa-CCGAc -3'
miRNA:   3'- cCCcCUUGGCGC------AGACGCCUggGGCU- -5'
4144 3' -61.8 NC_001664.1 + 62904 0.68 0.587275
Target:  5'- cGGuGuuuCUGuCGUCUGUGGAUCCCGAa -3'
miRNA:   3'- cCCcCuu-GGC-GCAGACGCCUGGGGCU- -5'
4144 3' -61.8 NC_001664.1 + 30693 0.7 0.46581
Target:  5'- cGGaGGAAUgggaaggUGCGUCUGCGG-CUCCGGa -3'
miRNA:   3'- cCC-CCUUG-------GCGCAGACGCCuGGGGCU- -5'
4144 3' -61.8 NC_001664.1 + 2421 0.72 0.375434
Target:  5'- uGGGGGGuuccuCCGCGggacCUgGCGGACaCCGAg -3'
miRNA:   3'- -CCCCCUu----GGCGCa---GA-CGCCUGgGGCU- -5'
4144 3' -61.8 NC_001664.1 + 153502 0.72 0.375434
Target:  5'- uGGGGGGuuccuCCGCGggacCUgGCGGACaCCGAg -3'
miRNA:   3'- -CCCCCUu----GGCGCa---GA-CGCCUGgGGCU- -5'
4144 3' -61.8 NC_001664.1 + 9160 0.74 0.297023
Target:  5'- cGGGGGAGCCGUGg-UGCGucuCUCCGAu -3'
miRNA:   3'- -CCCCCUUGGCGCagACGCcu-GGGGCU- -5'
4144 3' -61.8 NC_001664.1 + 4507 1.1 0.000947
Target:  5'- cGGGGGAACCGCGUCUGCGGACCCCGAu -3'
miRNA:   3'- -CCCCCUUGGCGCAGACGCCUGGGGCU- -5'
4144 3' -61.8 NC_001664.1 + 155588 1.1 0.000947
Target:  5'- cGGGGGAACCGCGUCUGCGGACCCCGAu -3'
miRNA:   3'- -CCCCCUUGGCGCAGACGCCUGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.