miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4145 5' -58.2 NC_001664.1 + 156067 1.13 0.001141
Target:  5'- aGGAGCAGCCAGUCGAAGCGGGCACGGg -3'
miRNA:   3'- -CCUCGUCGGUCAGCUUCGCCCGUGCC- -5'
4145 5' -58.2 NC_001664.1 + 154418 0.69 0.662622
Target:  5'- cGGGGCGGaUCGGgCG-AG-GGGCGCGGa -3'
miRNA:   3'- -CCUCGUC-GGUCaGCuUCgCCCGUGCC- -5'
4145 5' -58.2 NC_001664.1 + 153583 0.66 0.860914
Target:  5'- gGGGGaCGGgCGGagCGGAG-GGGCGCGa -3'
miRNA:   3'- -CCUC-GUCgGUCa-GCUUCgCCCGUGCc -5'
4145 5' -58.2 NC_001664.1 + 153543 0.67 0.786817
Target:  5'- cGGGguGUCGGaCGAcgGGCGGG-GCGGa -3'
miRNA:   3'- cCUCguCGGUCaGCU--UCGCCCgUGCC- -5'
4145 5' -58.2 NC_001664.1 + 152925 0.66 0.853379
Target:  5'- aGAGCAGCgacgaccacCAG-CGcGGCGGuaGCGGa -3'
miRNA:   3'- cCUCGUCG---------GUCaGCuUCGCCcgUGCC- -5'
4145 5' -58.2 NC_001664.1 + 152714 0.69 0.692293
Target:  5'- gGGAGCGGCgAGgcggcCGGAGagccgGGGUACGa -3'
miRNA:   3'- -CCUCGUCGgUCa----GCUUCg----CCCGUGCc -5'
4145 5' -58.2 NC_001664.1 + 152407 0.67 0.795681
Target:  5'- cGGcAGgGGUCGGUCGcgccacAGCGGuGCGCGa -3'
miRNA:   3'- -CC-UCgUCGGUCAGCu-----UCGCC-CGUGCc -5'
4145 5' -58.2 NC_001664.1 + 150936 0.7 0.602854
Target:  5'- -cAGCGGCgAGUCGGAGUGcGCuCGGg -3'
miRNA:   3'- ccUCGUCGgUCAGCUUCGCcCGuGCC- -5'
4145 5' -58.2 NC_001664.1 + 4985 1.13 0.001141
Target:  5'- aGGAGCAGCCAGUCGAAGCGGGCACGGg -3'
miRNA:   3'- -CCUCGUCGGUCAGCUUCGCCCGUGCC- -5'
4145 5' -58.2 NC_001664.1 + 3337 0.69 0.662622
Target:  5'- cGGGGCGGaUCGGgCG-AG-GGGCGCGGa -3'
miRNA:   3'- -CCUCGUC-GGUCaGCuUCgCCCGUGCC- -5'
4145 5' -58.2 NC_001664.1 + 2502 0.66 0.860914
Target:  5'- gGGGGaCGGgCGGagCGGAG-GGGCGCGa -3'
miRNA:   3'- -CCUC-GUCgGUCa-GCUUCgCCCGUGCc -5'
4145 5' -58.2 NC_001664.1 + 2462 0.67 0.786817
Target:  5'- cGGGguGUCGGaCGAcgGGCGGG-GCGGa -3'
miRNA:   3'- cCUCguCGGUCaGCU--UCGCCCgUGCC- -5'
4145 5' -58.2 NC_001664.1 + 1844 0.66 0.853379
Target:  5'- aGAGCAGCgacgaccacCAG-CGcGGCGGuaGCGGa -3'
miRNA:   3'- cCUCGUCG---------GUCaGCuUCGCCcgUGCC- -5'
4145 5' -58.2 NC_001664.1 + 1633 0.69 0.692293
Target:  5'- gGGAGCGGCgAGgcggcCGGAGagccgGGGUACGa -3'
miRNA:   3'- -CCUCGUCGgUCa----GCUUCg----CCCGUGCc -5'
4145 5' -58.2 NC_001664.1 + 1326 0.67 0.795681
Target:  5'- cGGcAGgGGUCGGUCGcgccacAGCGGuGCGCGa -3'
miRNA:   3'- -CC-UCgUCGGUCAGCu-----UCGCC-CGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.