miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4147 3' -53.4 NC_001664.1 + 157727 1.09 0.005391
Target:  5'- gUCCCGCCAAAGUCAAGACCACCCAAGc -3'
miRNA:   3'- -AGGGCGGUUUCAGUUCUGGUGGGUUC- -5'
4147 3' -53.4 NC_001664.1 + 6645 0.95 0.039526
Target:  5'- gUCCCGCCAAAGUCAAGA-CACCCAAGc -3'
miRNA:   3'- -AGGGCGGUUUCAGUUCUgGUGGGUUC- -5'
4147 3' -53.4 NC_001664.1 + 10562 0.77 0.482626
Target:  5'- aUCCCGCCGccgaugaaagagcaGAGUCucguucuuGGGCCACCuCAGGg -3'
miRNA:   3'- -AGGGCGGU--------------UUCAGu-------UCUGGUGG-GUUC- -5'
4147 3' -53.4 NC_001664.1 + 151003 0.77 0.485526
Target:  5'- cCCCGCggcgCGAGGUC-AGACCGCgCCAGGg -3'
miRNA:   3'- aGGGCG----GUUUCAGuUCUGGUG-GGUUC- -5'
4147 3' -53.4 NC_001664.1 + 146549 0.74 0.627599
Target:  5'- uUCCgGCCAAGGUgAGGAaaacggagguuCCugCCAAGg -3'
miRNA:   3'- -AGGgCGGUUUCAgUUCU-----------GGugGGUUC- -5'
4147 3' -53.4 NC_001664.1 + 134307 0.69 0.8801
Target:  5'- -gCCGCUgauGGAGuucaaguuaUCAGGGCCGCCCAGa -3'
miRNA:   3'- agGGCGG---UUUC---------AGUUCUGGUGGGUUc -5'
4147 3' -53.4 NC_001664.1 + 4067 0.69 0.899996
Target:  5'- gUCCCGCCucaugggcggaacAAGG--GAGACCGCCCu-- -3'
miRNA:   3'- -AGGGCGG-------------UUUCagUUCUGGUGGGuuc -5'
4147 3' -53.4 NC_001664.1 + 155149 0.69 0.899996
Target:  5'- gUCCCGCCucaugggcggaacAAGG--GAGACCGCCCu-- -3'
miRNA:   3'- -AGGGCGG-------------UUUCagUUCUGGUGGGuuc -5'
4147 3' -53.4 NC_001664.1 + 3507 0.68 0.913149
Target:  5'- gUCgCCGUCAcgguAGUCGuggcGGAgCACCCGGGg -3'
miRNA:   3'- -AG-GGCGGUu---UCAGU----UCUgGUGGGUUC- -5'
4147 3' -53.4 NC_001664.1 + 154589 0.68 0.913149
Target:  5'- gUCgCCGUCAcgguAGUCGuggcGGAgCACCCGGGg -3'
miRNA:   3'- -AG-GGCGGUu---UCAGU----UCUgGUGGGUUC- -5'
4147 3' -53.4 NC_001664.1 + 152193 0.68 0.913149
Target:  5'- cUCCGCCAcuG-CGAGGCCAUCUAu- -3'
miRNA:   3'- aGGGCGGUuuCaGUUCUGGUGGGUuc -5'
4147 3' -53.4 NC_001664.1 + 1111 0.68 0.913149
Target:  5'- cUCCGCCAcuG-CGAGGCCAUCUAu- -3'
miRNA:   3'- aGGGCGGUuuCaGUUCUGGUGGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.