miRNA: 3'- -UGGaGCGCA---CCGgGGCCGCaaCCAug -5'
miRNA: 3'- -UGGaGCGCA---CCGgGGCCGCaaCCAug -5'
miRNA: 3'- -UGGAGCGCACCGGGGCCGCAACCAUG- -5'
miRNA: 3'- -UGGAGCGCACCGGGGCCGCAACCAUG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 4147 | 5' | -61.1 | NC_001664.1 | + | 6493 | 0.66 | 0.678421 |
|
Target: 5'- gGCC-CGCGUacaGGUgCCGGCGgaGGUc- -3' miRNA: 3'- -UGGaGCGCA---CCGgGGCCGCaaCCAug -5' |
|||||||
| 4147 | 5' | -61.1 | NC_001664.1 | + | 157574 | 0.66 | 0.678421 |
|
Target: 5'- gGCC-CGCGUacaGGUgCCGGCGgaGGUc- -3' miRNA: 3'- -UGGaGCGCA---CCGgGGCCGCaaCCAug -5' |
|||||||
| 4147 | 5' | -61.1 | NC_001664.1 | + | 6612 | 1.09 | 0.001055 |
|
Target: 5'- cACCUCGCGUGGCCCCGGCGUUGGUACg -3' miRNA: 3'- -UGGAGCGCACCGGGGCCGCAACCAUG- -5' |
|||||||
| 4147 | 5' | -61.1 | NC_001664.1 | + | 157693 | 1.09 | 0.001055 |
|
Target: 5'- cACCUCGCGUGGCCCCGGCGUUGGUACg -3' miRNA: 3'- -UGGAGCGCACCGGGGCCGCAACCAUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home