miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4149 5' -46.9 NC_001664.1 + 1215 0.66 0.9998
Target:  5'- aCUGgc-GAGAAGCGccCGACGCGg-- -3'
miRNA:   3'- -GAUauaUUCUUCGCuuGCUGCGCgaa -5'
4149 5' -46.9 NC_001664.1 + 1879 0.66 0.999881
Target:  5'- -----cGAGGAcaccGCGAugACGGCGCGCa- -3'
miRNA:   3'- gauauaUUCUU----CGCU--UGCUGCGCGaa -5'
4149 5' -46.9 NC_001664.1 + 7203 1.06 0.032162
Target:  5'- cCUAUAUAAGAAGCGAACGACGCGCUUu -3'
miRNA:   3'- -GAUAUAUUCUUCGCUUGCUGCGCGAA- -5'
4149 5' -46.9 NC_001664.1 + 8183 0.8 0.693639
Target:  5'- -gGUAU-AGggGCGGACGGCGCGUa- -3'
miRNA:   3'- gaUAUAuUCuuCGCUUGCUGCGCGaa -5'
4149 5' -46.9 NC_001664.1 + 8366 0.66 0.9998
Target:  5'- -gGUGUA--GAGCGGACG-CGCGUa- -3'
miRNA:   3'- gaUAUAUucUUCGCUUGCuGCGCGaa -5'
4149 5' -46.9 NC_001664.1 + 10568 0.66 0.999845
Target:  5'- -------cGAAGaCGGACGGcCGCGCUUc -3'
miRNA:   3'- gauauauuCUUC-GCUUGCU-GCGCGAA- -5'
4149 5' -46.9 NC_001664.1 + 44944 0.66 0.999845
Target:  5'- ------uGGAAGCuAACGACGUGUUUa -3'
miRNA:   3'- gauauauUCUUCGcUUGCUGCGCGAA- -5'
4149 5' -46.9 NC_001664.1 + 60670 0.69 0.995648
Target:  5'- ---aGUAAGGAGUGAAaCGAUGUGUUa -3'
miRNA:   3'- gauaUAUUCUUCGCUU-GCUGCGCGAa -5'
4149 5' -46.9 NC_001664.1 + 82985 0.71 0.987847
Target:  5'- gCUGUAacAGAAGUGGuUGAUGCGCUc -3'
miRNA:   3'- -GAUAUauUCUUCGCUuGCUGCGCGAa -5'
4149 5' -46.9 NC_001664.1 + 152297 0.66 0.9998
Target:  5'- aCUGgc-GAGAAGCGccCGACGCGg-- -3'
miRNA:   3'- -GAUauaUUCUUCGCuuGCUGCGCgaa -5'
4149 5' -46.9 NC_001664.1 + 152960 0.66 0.999881
Target:  5'- -----cGAGGAcaccGCGAugACGGCGCGCa- -3'
miRNA:   3'- gauauaUUCUU----CGCU--UGCUGCGCGaa -5'
4149 5' -46.9 NC_001664.1 + 158285 1.06 0.032162
Target:  5'- cCUAUAUAAGAAGCGAACGACGCGCUUu -3'
miRNA:   3'- -GAUAUAUUCUUCGCUUGCUGCGCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.