miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4151 5' -50.1 NC_001664.1 + 11775 0.67 0.993252
Target:  5'- -uGCCUUaucUCGCGAgcgAGUCGcauggaUGCACa -3'
miRNA:   3'- ccCGGAAa--AGCGCUa--UCAGU------ACGUGa -5'
4151 5' -50.1 NC_001664.1 + 32553 0.67 0.991059
Target:  5'- uGGCCUUUUUGUGAUAcGUUAUugACUa -3'
miRNA:   3'- cCCGGAAAAGCGCUAU-CAGUAcgUGA- -5'
4151 5' -50.1 NC_001664.1 + 44510 0.67 0.993252
Target:  5'- uGGcGCauugUUUCGUGAaAGUUAUGUACg -3'
miRNA:   3'- -CC-CGga--AAAGCGCUaUCAGUACGUGa -5'
4151 5' -50.1 NC_001664.1 + 77818 1.1 0.00925
Target:  5'- uGGGCCUUUUCGCGAUAGUCAUGCACUc -3'
miRNA:   3'- -CCCGGAAAAGCGCUAUCAGUACGUGA- -5'
4151 5' -50.1 NC_001664.1 + 143496 0.68 0.98102
Target:  5'- cGGGUCc--UUGUGAguuagcGGUCAUGCACg -3'
miRNA:   3'- -CCCGGaaaAGCGCUa-----UCAGUACGUGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.