miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4152 3' -48.1 NC_001664.1 + 88178 1.07 0.022102
Target:  5'- aAGCGACGGUUUCCAAUCACGAAAGAAu -3'
miRNA:   3'- -UCGCUGCCAAAGGUUAGUGCUUUCUU- -5'
4152 3' -48.1 NC_001664.1 + 87945 0.8 0.647846
Target:  5'- cGUGACGGUgcUCCGAUCAgGggGGGAa -3'
miRNA:   3'- uCGCUGCCAa-AGGUUAGUgCuuUCUU- -5'
4152 3' -48.1 NC_001664.1 + 3496 0.7 0.984835
Target:  5'- cGGCGGCGGUUgucgCCG-UCACGguAGu- -3'
miRNA:   3'- -UCGCUGCCAAa---GGUuAGUGCuuUCuu -5'
4152 3' -48.1 NC_001664.1 + 154578 0.7 0.984835
Target:  5'- cGGCGGCGGUUgucgCCG-UCACGguAGu- -3'
miRNA:   3'- -UCGCUGCCAAa---GGUuAGUGCuuUCuu -5'
4152 3' -48.1 NC_001664.1 + 2986 0.68 0.995041
Target:  5'- cGGCGACGGagcCCGcuggguAUCGCGGAAGu- -3'
miRNA:   3'- -UCGCUGCCaaaGGU------UAGUGCUUUCuu -5'
4152 3' -48.1 NC_001664.1 + 154068 0.68 0.995041
Target:  5'- cGGCGACGGagcCCGcuggguAUCGCGGAAGu- -3'
miRNA:   3'- -UCGCUGCCaaaGGU------UAGUGCUUUCuu -5'
4152 3' -48.1 NC_001664.1 + 6561 0.66 0.999201
Target:  5'- aGGCGACGGcUUCUGcGUCucccucucuCGAGAGAGa -3'
miRNA:   3'- -UCGCUGCCaAAGGU-UAGu--------GCUUUCUU- -5'
4152 3' -48.1 NC_001664.1 + 157642 0.66 0.999201
Target:  5'- aGGCGACGGcUUCUGcGUCucccucucuCGAGAGAGa -3'
miRNA:   3'- -UCGCUGCCaAAGGU-UAGu--------GCUUUCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.