Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4152 | 5' | -59.6 | NC_001664.1 | + | 3388 | 0.66 | 0.765698 |
Target: 5'- -aUCCCCCUCcc--CGGAGCAcacacgccgacuCCGUCc -3' miRNA: 3'- aaAGGGGGGGacuaGCCUCGU------------GGCAG- -5' |
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4152 | 5' | -59.6 | NC_001664.1 | + | 154470 | 0.66 | 0.765698 |
Target: 5'- -aUCCCCCUCcc--CGGAGCAcacacgccgacuCCGUCc -3' miRNA: 3'- aaAGGGGGGGacuaGCCUCGU------------GGCAG- -5' |
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4152 | 5' | -59.6 | NC_001664.1 | + | 144507 | 0.68 | 0.63828 |
Target: 5'- aUUCCUCCCCc--UCGGucaaCACCGUCa -3' miRNA: 3'- aAAGGGGGGGacuAGCCuc--GUGGCAG- -5' |
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4152 | 5' | -59.6 | NC_001664.1 | + | 88133 | 1.07 | 0.001641 |
Target: 5'- uUUUCCCCCCCUGAUCGGAGCACCGUCa -3' miRNA: 3'- -AAAGGGGGGGACUAGCCUCGUGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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