miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4153 3' -46.8 NC_001664.1 + 90982 1.06 0.030178
Target:  5'- aAAGCAAAAACAAAAUCCAUCCGGGCUu -3'
miRNA:   3'- -UUCGUUUUUGUUUUAGGUAGGCCCGA- -5'
4153 3' -46.8 NC_001664.1 + 32899 0.69 0.994736
Target:  5'- cGGUAAAGAUGAGAU-CGUCCGGuGCa -3'
miRNA:   3'- uUCGUUUUUGUUUUAgGUAGGCC-CGa -5'
4153 3' -46.8 NC_001664.1 + 151075 0.67 0.99947
Target:  5'- uGGCGAuAACugu-UCCgGUCCGGGUa -3'
miRNA:   3'- uUCGUUuUUGuuuuAGG-UAGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 154072 0.67 0.99958
Target:  5'- gAAGCGGcGACGGAG-CCcgCUGGGUa -3'
miRNA:   3'- -UUCGUUuUUGUUUUaGGuaGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 2990 0.67 0.99958
Target:  5'- gAAGCGGcGACGGAG-CCcgCUGGGUa -3'
miRNA:   3'- -UUCGUUuUUGUUUUaGGuaGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 154045 0.66 0.999741
Target:  5'- -cGCGGAAguGCGAGA-CCGagCGGGCUc -3'
miRNA:   3'- uuCGUUUU--UGUUUUaGGUagGCCCGA- -5'
4153 3' -46.8 NC_001664.1 + 2963 0.66 0.999741
Target:  5'- -cGCGGAAguGCGAGA-CCGagCGGGCUc -3'
miRNA:   3'- uuCGUUUU--UGUUUUaGGUagGCCCGA- -5'
4153 3' -46.8 NC_001664.1 + 157027 0.66 0.999799
Target:  5'- uGGGCAAAGACGGAgccguguacGUCCAcCacaugaGGGCg -3'
miRNA:   3'- -UUCGUUUUUGUUU---------UAGGUaGg-----CCCGa -5'
4153 3' -46.8 NC_001664.1 + 10284 0.66 0.999846
Target:  5'- cAGGUAGGAAgAAGcgcCCAUUCGGGUUg -3'
miRNA:   3'- -UUCGUUUUUgUUUua-GGUAGGCCCGA- -5'
4153 3' -46.8 NC_001664.1 + 2490 0.76 0.871778
Target:  5'- cGAGCGAAAccGCGGGuGUCC-UCCGGGCa -3'
miRNA:   3'- -UUCGUUUU--UGUUU-UAGGuAGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 5946 0.66 0.999799
Target:  5'- uGGGCAAAGACGGAgccguguacGUCCAcCacaugaGGGCg -3'
miRNA:   3'- -UUCGUUUUUGUUU---------UAGGUaGg-----CCCGa -5'
4153 3' -46.8 NC_001664.1 + 8383 0.67 0.99958
Target:  5'- -cGUAGAGACGc---CCcgCCGGGCg -3'
miRNA:   3'- uuCGUUUUUGUuuuaGGuaGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 40944 0.67 0.99947
Target:  5'- aAAGCGAGAuGCGg---CCAaaacUCCGGGCa -3'
miRNA:   3'- -UUCGUUUU-UGUuuuaGGU----AGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 9605 0.68 0.998749
Target:  5'- aAAGUAGAGACGAAGUCCcacacgucGUCCGccgacagcGGCc -3'
miRNA:   3'- -UUCGUUUUUGUUUUAGG--------UAGGC--------CCGa -5'
4153 3' -46.8 NC_001664.1 + 153025 0.7 0.993845
Target:  5'- aGAGCAcgaggaaagGAAACAGA--CCGacUCCGGGCg -3'
miRNA:   3'- -UUCGU---------UUUUGUUUuaGGU--AGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 1944 0.7 0.993845
Target:  5'- aGAGCAcgaggaaagGAAACAGA--CCGacUCCGGGCg -3'
miRNA:   3'- -UUCGU---------UUUUGUUUuaGGU--AGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 26950 0.7 0.990954
Target:  5'- cAGaCAGAAACAu-AUCCAaguaguugcaaucuuUCCGGGCa -3'
miRNA:   3'- uUC-GUUUUUGUuuUAGGU---------------AGGCCCGa -5'
4153 3' -46.8 NC_001664.1 + 153572 0.76 0.871778
Target:  5'- cGAGCGAAAccGCGGGuGUCC-UCCGGGCa -3'
miRNA:   3'- -UUCGUUUU--UGUUU-UAGGuAGGCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.