miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4155 3' -59.8 NC_001664.1 + 128155 1.09 0.001039
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 128119 1.09 0.001039
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 128023 1.09 0.001039
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127903 1.08 0.001295
Target:  5'- aGGGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127627 1.08 0.00116
Target:  5'- aAAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127843 1.08 0.00116
Target:  5'- aAAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127975 1.08 0.00116
Target:  5'- aAAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 128083 1.06 0.001803
Target:  5'- aGAGCCUCCAGUAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127687 1.06 0.001803
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGUAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127771 1.05 0.00207
Target:  5'- gAAGCCUCCAGCAGAGCCUCCAGUAGGa -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 128202 0.98 0.006232
Target:  5'- aGAGCCUCaAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGgUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127723 0.98 0.006232
Target:  5'- aGAGCCUCaAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGgUCGUCUCGGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 128047 0.93 0.013087
Target:  5'- aAAGCCUCCAGCAGAGCCUCCAGCn-- -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGucc -5'
4155 3' -59.8 NC_001664.1 + 127939 0.88 0.032228
Target:  5'- aGAGCCUCCAGCAGGGaUUCUAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCgGAGGUCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127818 0.8 0.119002
Target:  5'- nGGCUUCCAGCAGGGCCUCaAGCAa- -3'
miRNA:   3'- uUCGGAGGUCGUCUCGGAGgUCGUcc -5'
4155 3' -59.8 NC_001664.1 + 152683 0.68 0.603329
Target:  5'- cAGGCCUCCGGCu---CCUCUccgucccccgAGCGGGa -3'
miRNA:   3'- -UUCGGAGGUCGucucGGAGG----------UCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 127795 0.68 0.603329
Target:  5'- aAAGCCUCCGGUAaAGCCUCaAGCn-- -3'
miRNA:   3'- -UUCGGAGGUCGUcUCGGAGgUCGucc -5'
4155 3' -59.8 NC_001664.1 + 127602 0.68 0.593215
Target:  5'- nGGCUUCCAGCAGGGagCUgaGGCAGa -3'
miRNA:   3'- uUCGGAGGUCGUCUCg-GAggUCGUCc -5'
4155 3' -59.8 NC_001664.1 + 1601 0.68 0.593215
Target:  5'- cAGGCCUCCGGCuu--CCUCUccgucccccgAGCGGGa -3'
miRNA:   3'- -UUCGGAGGUCGucucGGAGG----------UCGUCC- -5'
4155 3' -59.8 NC_001664.1 + 24570 0.67 0.64392
Target:  5'- cAAGUC-CUAgaaguugagauGCAGAGCCUCuCAGCAGu -3'
miRNA:   3'- -UUCGGaGGU-----------CGUCUCGGAG-GUCGUCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.