miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4155 5' -51.3 NC_001664.1 + 110609 0.67 0.981505
Target:  5'- cGCCUUgcucuCGAGGCCUC-GGUGAGGg -3'
miRNA:   3'- cCGGAGuuc--GUUUCGGAGgCCAUUUC- -5'
4155 5' -51.3 NC_001664.1 + 87001 0.68 0.971447
Target:  5'- gGGCUUCGAuGCGuuGCa-CCGGUAAAu -3'
miRNA:   3'- -CCGGAGUU-CGUuuCGgaGGCCAUUUc -5'
4155 5' -51.3 NC_001664.1 + 99891 0.68 0.971447
Target:  5'- uGGCUUuucauuacCGGGCGccuuuAAGCCUCugaCGGUAGAGg -3'
miRNA:   3'- -CCGGA--------GUUCGU-----UUCGGAG---GCCAUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127961 0.69 0.938687
Target:  5'- nGCCUCcagcagggauucuAGCAGAGCCUCCaGcAGGGa -3'
miRNA:   3'- cCGGAGu------------UCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 45842 0.7 0.930472
Target:  5'- uGGCgUCGuAGUAGaAGCCUUCGGUGc-- -3'
miRNA:   3'- -CCGgAGU-UCGUU-UCGGAGGCCAUuuc -5'
4155 5' -51.3 NC_001664.1 + 17089 0.7 0.919281
Target:  5'- uGGCCUCGgaacugcuGGCuGAGauucaCUCCGcGUAAAGa -3'
miRNA:   3'- -CCGGAGU--------UCGuUUCg----GAGGC-CAUUUC- -5'
4155 5' -51.3 NC_001664.1 + 128091 0.72 0.831574
Target:  5'- --aUUCuAGCAGAGCCUCCaGUAGAGc -3'
miRNA:   3'- ccgGAGuUCGUUUCGGAGGcCAUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127625 0.77 0.579759
Target:  5'- nGCCUCcAGCAGAGCCUCCaGcAGGGc -3'
miRNA:   3'- cCGGAGuUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127841 0.77 0.579759
Target:  5'- nGCCUCcAGCAGAGCCUCCaGcAGGGc -3'
miRNA:   3'- cCGGAGuUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 128153 0.79 0.487755
Target:  5'- aGCCUCcAGCAGAGCCUCCaGcAGGGa -3'
miRNA:   3'- cCGGAGuUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 128117 0.79 0.487755
Target:  5'- aGCCUCcAGCAGAGCCUCCaGcAGGGa -3'
miRNA:   3'- cCGGAGuUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 128021 0.79 0.487755
Target:  5'- aGCCUCcAGCAGAGCCUCCaGcAGGGa -3'
miRNA:   3'- cCGGAGuUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127650 0.8 0.439667
Target:  5'- gGGCCUCAAGUAAAGCCUCaaGaAAAGc -3'
miRNA:   3'- -CCGGAGUUCGUUUCGGAGgcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127866 0.8 0.439667
Target:  5'- gGGCCUCAAGUAAAGCCUCaaGaAAAGc -3'
miRNA:   3'- -CCGGAGUUCGUUUCGGAGgcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127902 0.84 0.291696
Target:  5'- gGGCCUCcAGCAGAGCCUCCaGcAGGGa -3'
miRNA:   3'- -CCGGAGuUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127781 0.86 0.211136
Target:  5'- nGCCUCAAGCGAAGCCUCCaGcAGAGc -3'
miRNA:   3'- cCGGAGUUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 128200 0.87 0.185638
Target:  5'- aGCCUCAAGCAGAGCCUCCaGcAGGGa -3'
miRNA:   3'- cCGGAGUUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127721 0.87 0.185638
Target:  5'- aGCCUCAAGCAGAGCCUCCaGcAGGGa -3'
miRNA:   3'- cCGGAGUUCGUUUCGGAGGcCaUUUC- -5'
4155 5' -51.3 NC_001664.1 + 127685 0.88 0.162895
Target:  5'- aGCCUCcAGCAGAGCCUCCaGUAGGGa -3'
miRNA:   3'- cCGGAGuUCGUUUCGGAGGcCAUUUC- -5'
4155 5' -51.3 NC_001664.1 + 128058 0.92 0.100458
Target:  5'- gGGCCUCAAGCAAAGCCUCCaGcAGAGc -3'
miRNA:   3'- -CCGGAGUUCGUUUCGGAGGcCaUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.