miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4156 3' -58.7 NC_001664.1 + 128200 0.88 0.043041
Target:  5'- aGCCUCaAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- -CGGAGgUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 128153 0.99 0.007379
Target:  5'- aGCCUCCAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 128117 0.99 0.007379
Target:  5'- aGCCUCCAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 128081 1.12 0.000947
Target:  5'- aGCCUCCAGUAGAGCCUCCAGCAGGGCc -3'
miRNA:   3'- -CGGAGGUCAUCUCGGAGGUCGUCCCG- -5'
4156 3' -58.7 NC_001664.1 + 128045 0.86 0.057744
Target:  5'- aGCCUCCAGcAGAGCCUCCAGCAGn-- -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCccg -5'
4156 3' -58.7 NC_001664.1 + 128021 0.99 0.007379
Target:  5'- aGCCUCCAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 127973 0.99 0.007379
Target:  5'- aGCCUCCAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 127947 0.83 0.097791
Target:  5'- -aUUCUAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- cgGAGGUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 127901 0.99 0.007793
Target:  5'- gGCCUCCAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 127841 1.05 0.002993
Target:  5'- aGCCUCCAGcAGAGCCUCCAGCAGGGCu -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCG- -5'
4156 3' -58.7 NC_001664.1 + 127793 0.68 0.70272
Target:  5'- aGCCUCCGGUAaAGCCUCaAGCGa--- -3'
miRNA:   3'- -CGGAGGUCAUcUCGGAGgUCGUcccg -5'
4156 3' -58.7 NC_001664.1 + 127769 0.92 0.023784
Target:  5'- aGCCUCCAGcAGAGCCUCCaguaggaauucuAGCAGGGCc -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGG------------UCGUCCCG- -5'
4156 3' -58.7 NC_001664.1 + 127721 0.88 0.043041
Target:  5'- aGCCUCaAGcAGAGCCUCCAGCAGGGa -3'
miRNA:   3'- -CGGAGgUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 127685 0.96 0.012732
Target:  5'- aGCCUCCAGcAGAGCCUCCAGUAGGGa -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCg -5'
4156 3' -58.7 NC_001664.1 + 127625 1.05 0.002993
Target:  5'- aGCCUCCAGcAGAGCCUCCAGCAGGGCu -3'
miRNA:   3'- -CGGAGGUCaUCUCGGAGGUCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.