miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4156 5' -59.6 NC_001664.1 + 127771 1.02 0.003306
Target:  5'- gAAGCCUCCAGCAGAGCCUCCAGUAGGa -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 128035 1.07 0.001358
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGCAGAg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 128155 1.05 0.001744
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 128119 1.05 0.001744
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127975 1.05 0.00195
Target:  5'- aAAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127843 1.05 0.00195
Target:  5'- aAAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127627 1.05 0.00195
Target:  5'- aAAGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127903 1.04 0.002179
Target:  5'- aGGGCCUCCAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 128083 1.02 0.003042
Target:  5'- aGAGCCUCCAGUAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127687 1.02 0.003042
Target:  5'- aGAGCCUCCAGCAGAGCCUCCAGUAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 128202 0.94 0.010607
Target:  5'- aGAGCCUCaAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGgUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127723 0.94 0.010607
Target:  5'- aGAGCCUCaAGCAGAGCCUCCAGCAGGg -3'
miRNA:   3'- -UUCGGAGgUCGUCUCGGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127939 0.84 0.055099
Target:  5'- aGAGCCUCCAGCAGGGaUUCUAGCAGGg -3'
miRNA:   3'- -UUCGGAGGUCGUCUCgGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 128010 0.82 0.082454
Target:  5'- nAGCCUCCAGCAGGGaUUCUAGCAGGg -3'
miRNA:   3'- uUCGGAGGUCGUCUCgGAGGUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 127818 0.8 0.110315
Target:  5'- nGGCUUCCAGCAGGGCCUCaAGCAa- -3'
miRNA:   3'- uUCGGAGGUCGUCUCGGAGgUCGUcu -5'
4156 5' -59.6 NC_001664.1 + 127602 0.71 0.417538
Target:  5'- nGGCUUCCAGCAGGGagCUgaGGCAGAu -3'
miRNA:   3'- uUCGGAGGUCGUCUCg-GAggUCGUCU- -5'
4156 5' -59.6 NC_001664.1 + 128058 0.71 0.426358
Target:  5'- nGGCCUCaAGCAaAGCCUCCAGCn-- -3'
miRNA:   3'- uUCGGAGgUCGUcUCGGAGGUCGucu -5'
4156 5' -59.6 NC_001664.1 + 127795 0.68 0.580059
Target:  5'- aAAGCCUCCGGUAaAGCCUCaAGCn-- -3'
miRNA:   3'- -UUCGGAGGUCGUcUCGGAGgUCGucu -5'
4156 5' -59.6 NC_001664.1 + 85794 0.68 0.599393
Target:  5'- -cGCCUUUcuccucgaucguaGGCAGAGUCUCCAuCGGAa -3'
miRNA:   3'- uuCGGAGG-------------UCGUCUCGGAGGUcGUCU- -5'
4156 5' -59.6 NC_001664.1 + 24570 0.67 0.641342
Target:  5'- cAAGUC-CUAgaaguugagauGCAGAGCCUCuCAGCAGu -3'
miRNA:   3'- -UUCGGaGGU-----------CGUCUCGGAG-GUCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.