miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4157 3' -48.9 NC_001664.1 + 134575 1.13 0.007822
Target:  5'- uUCACUGAAAACAGCAGACAGUCAGGGg -3'
miRNA:   3'- -AGUGACUUUUGUCGUCUGUCAGUCCC- -5'
4157 3' -48.9 NC_001664.1 + 153561 0.77 0.746363
Target:  5'- gCGC--GAGACAGCGGACAG-CGGGGu -3'
miRNA:   3'- aGUGacUUUUGUCGUCUGUCaGUCCC- -5'
4157 3' -48.9 NC_001664.1 + 2480 0.77 0.746363
Target:  5'- gCGC--GAGACAGCGGACAG-CGGGGu -3'
miRNA:   3'- aGUGacUUUUGUCGUCUGUCaGUCCC- -5'
4157 3' -48.9 NC_001664.1 + 150462 0.73 0.920444
Target:  5'- aUCGUUGucGAACAGCGGACucgaagaugAGUCGGGGc -3'
miRNA:   3'- -AGUGACu-UUUGUCGUCUG---------UCAGUCCC- -5'
4157 3' -48.9 NC_001664.1 + 9803 0.69 0.989288
Target:  5'- cCGCUGu---CGGCGGACGacGUguGGGa -3'
miRNA:   3'- aGUGACuuuuGUCGUCUGU--CAguCCC- -5'
4157 3' -48.9 NC_001664.1 + 2521 0.68 0.995502
Target:  5'- aCACgc---GCAGUGGACGG-CGGGGg -3'
miRNA:   3'- aGUGacuuuUGUCGUCUGUCaGUCCC- -5'
4157 3' -48.9 NC_001664.1 + 153602 0.68 0.995502
Target:  5'- aCACgc---GCAGUGGACGG-CGGGGg -3'
miRNA:   3'- aGUGacuuuUGUCGUCUGUCaGUCCC- -5'
4157 3' -48.9 NC_001664.1 + 136933 0.67 0.997695
Target:  5'- aCAUUcGAAuauaGGCAGaACAGUCAGGu -3'
miRNA:   3'- aGUGA-CUUuug-UCGUC-UGUCAGUCCc -5'
4157 3' -48.9 NC_001664.1 + 67911 0.66 0.998913
Target:  5'- -gGCUGcGAGCGGCcGACuGUUcagAGGGa -3'
miRNA:   3'- agUGACuUUUGUCGuCUGuCAG---UCCC- -5'
4157 3' -48.9 NC_001664.1 + 134347 0.66 0.9984
Target:  5'- gUCACUG-AGGCuGUAccuacACAGUUAGGGu -3'
miRNA:   3'- -AGUGACuUUUGuCGUc----UGUCAGUCCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.