miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4159 3' -46.2 NC_001664.1 + 118844 0.66 0.999927
Target:  5'- -gACGggGG-GGAAAUUCUAUGa-GAa -3'
miRNA:   3'- aaUGCuuCCaUCUUUAAGAUGCggCU- -5'
4159 3' -46.2 NC_001664.1 + 8770 0.66 0.99997
Target:  5'- -cACGAAcuacGGUAGAAGcUUCgcaagACGCCa- -3'
miRNA:   3'- aaUGCUU----CCAUCUUU-AAGa----UGCGGcu -5'
4159 3' -46.2 NC_001664.1 + 156139 0.69 0.998421
Target:  5'- -cACGGuAGGUGGAucAGUUCUccgcgAUGCCGGc -3'
miRNA:   3'- aaUGCU-UCCAUCU--UUAAGA-----UGCGGCU- -5'
4159 3' -46.2 NC_001664.1 + 5057 0.69 0.998421
Target:  5'- -cACGGuAGGUGGAucAGUUCUccgcgAUGCCGGc -3'
miRNA:   3'- aaUGCU-UCCAUCU--UUAAGA-----UGCGGCU- -5'
4159 3' -46.2 NC_001664.1 + 44222 0.69 0.998703
Target:  5'- gUUGCGAGGGgagUAGGAGUUUgcagGCGUgGAu -3'
miRNA:   3'- -AAUGCUUCC---AUCUUUAAGa---UGCGgCU- -5'
4159 3' -46.2 NC_001664.1 + 11696 0.68 0.999443
Target:  5'- -aACGAGGGuUAGAcAUUCgugaagcGCGCCGc -3'
miRNA:   3'- aaUGCUUCC-AUCUuUAAGa------UGCGGCu -5'
4159 3' -46.2 NC_001664.1 + 10632 0.68 0.999649
Target:  5'- -gACGAAGGUcGGAuucucUCUACgugGCCGAc -3'
miRNA:   3'- aaUGCUUCCA-UCUuua--AGAUG---CGGCU- -5'
4159 3' -46.2 NC_001664.1 + 154541 0.67 0.999711
Target:  5'- -aGCGggGGUGGGAGggaagguggaUGgGCCGGc -3'
miRNA:   3'- aaUGCuuCCAUCUUUaag-------AUgCGGCU- -5'
4159 3' -46.2 NC_001664.1 + 3460 0.67 0.999711
Target:  5'- -aGCGggGGUGGGAGggaagguggaUGgGCCGGc -3'
miRNA:   3'- aaUGCuuCCAUCUUUaag-------AUgCGGCU- -5'
4159 3' -46.2 NC_001664.1 + 150094 1.08 0.028964
Target:  5'- uUUACGAAGGUAGAAAUUCUACGCCGAg -3'
miRNA:   3'- -AAUGCUUCCAUCUUUAAGAUGCGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.