miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4159 5' -39.6 NC_001664.1 + 14561 0.71 1
Target:  5'- uGUCGUUaUCUAAGUgaguaUGCCUCCa -3'
miRNA:   3'- uUAGUAA-AGAUUUAaaag-AUGGAGGc -5'
4159 5' -39.6 NC_001664.1 + 22819 0.68 1
Target:  5'- aAAUCgGUUUCUGAGU--UC-GCCUCCa -3'
miRNA:   3'- -UUAG-UAAAGAUUUAaaAGaUGGAGGc -5'
4159 5' -39.6 NC_001664.1 + 82357 0.67 1
Target:  5'- -uUCuagUUUUGGGUUUUCUGCCaauaCCGg -3'
miRNA:   3'- uuAGua-AAGAUUUAAAAGAUGGa---GGC- -5'
4159 5' -39.6 NC_001664.1 + 126544 0.69 1
Target:  5'- -uUCAgacUCU--GUUUUCUGCgCUCCGg -3'
miRNA:   3'- uuAGUaa-AGAuuUAAAAGAUG-GAGGC- -5'
4159 5' -39.6 NC_001664.1 + 150049 1.1 0.116649
Target:  5'- aAAUCAUUUCUAAAUUUUCUACCUCCGa -3'
miRNA:   3'- -UUAGUAAAGAUUUAAAAGAUGGAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.