Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
416 | 5' | -58.2 | AC_000011.1 | + | 25094 | 1.08 | 0.00026 |
Target: 5'- aGUGCCACUGCCGCUGCAACCUCUGCAc -3' miRNA: 3'- -CACGGUGACGGCGACGUUGGAGACGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 30810 | 0.66 | 0.37413 |
Target: 5'- uUGCCuucaccaccugcauCUGCUGCUGUAGCauagUCUGCc -3' miRNA: 3'- cACGGu-------------GACGGCGACGUUGg---AGACGu -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 24989 | 0.68 | 0.303292 |
Target: 5'- aGUGCCcCccGCCGCUGUggAGCCaCUGCu -3' miRNA: 3'- -CACGGuGa-CGGCGACG--UUGGaGACGu -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 27142 | 0.7 | 0.220677 |
Target: 5'- -gGaCCACUGCCGCcGCuuCCgCUGCu -3' miRNA: 3'- caC-GGUGACGGCGaCGuuGGaGACGu -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 17067 | 0.7 | 0.208934 |
Target: 5'- -cGCCGCgGCCGC-GC-ACCUCUGa- -3' miRNA: 3'- caCGGUGaCGGCGaCGuUGGAGACgu -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 3661 | 0.74 | 0.115213 |
Target: 5'- -cGCaGCUGCCGCcGCAGCUgCUGCAu -3' miRNA: 3'- caCGgUGACGGCGaCGUUGGaGACGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 17016 | 0.76 | 0.074081 |
Target: 5'- -cGCCGCaccGCCGCUGCAACCacccCUGCc -3' miRNA: 3'- caCGGUGa--CGGCGACGUUGGa---GACGu -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 13983 | 0.66 | 0.388834 |
Target: 5'- -cGCCGCcGCCGCcaucGCCUgCUGCAu -3' miRNA: 3'- caCGGUGaCGGCGacguUGGA-GACGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 8561 | 0.66 | 0.388834 |
Target: 5'- cGUGCCcCUGCCGCcccuGCCUCcggGCc -3' miRNA: 3'- -CACGGuGACGGCGacguUGGAGa--CGu -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 15988 | 0.68 | 0.303292 |
Target: 5'- -gGCCGCUGCCGCcGCcguGGCCgc-GCGu -3' miRNA: 3'- caCGGUGACGGCGaCG---UUGGagaCGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 22641 | 0.68 | 0.302513 |
Target: 5'- gGUGCgCGCUGUgGCUGCAcgggugcaccgagGCCgagggcaagCUGCGg -3' miRNA: 3'- -CACG-GUGACGgCGACGU-------------UGGa--------GACGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 3536 | 0.68 | 0.295581 |
Target: 5'- -aGCCGCUuCCGCU-CAugCUgCUGCAa -3' miRNA: 3'- caCGGUGAcGGCGAcGUugGA-GACGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 2133 | 0.69 | 0.259311 |
Target: 5'- cUGCUGCUGCUGCUgGCGACgUUgGCGu -3' miRNA: 3'- cACGGUGACGGCGA-CGUUGgAGaCGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 30310 | 0.69 | 0.245853 |
Target: 5'- aUGCCACUcgGaCCccagacgaGCUgGCAACCUCUGCu -3' miRNA: 3'- cACGGUGA--C-GG--------CGA-CGUUGGAGACGu -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 14909 | 0.73 | 0.122097 |
Target: 5'- -aGCCGCcucgGCCGCUGCcACUgCUGCGg -3' miRNA: 3'- caCGGUGa---CGGCGACGuUGGaGACGU- -5' |
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416 | 5' | -58.2 | AC_000011.1 | + | 6445 | 0.66 | 0.398215 |
Target: 5'- cUGCCccccuuCUGCuCGCgcaaggGCGgacGCCUCUGCu -3' miRNA: 3'- cACGGu-----GACG-GCGa-----CGU---UGGAGACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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