miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
4166	3'	-61.7	NC_001664.1	+	6433	0.66	0.720811
	Target:  5'- aCGC-CGG-GGCCACGCGagguggagaUCgCuuGGGu -3' miRNA:   3'- aGCGuGUCaCCGGUGCGC---------AG-GggCCC- -5'
4166	3'	-61.7	NC_001664.1	+	157515	0.66	0.720811
	Target:  5'- aCGC-CGG-GGCCACGCGagguggagaUCgCuuGGGu -3' miRNA:   3'- aGCGuGUCaCCGGUGCGC---------AG-GggCCC- -5'
4166	3'	-61.7	NC_001664.1	+	6521	0.68	0.557065
	Target:  5'- cCGCACAcgaGCCACG-GUCCCaGGGg -3' miRNA:   3'- aGCGUGUcacCGGUGCgCAGGGgCCC- -5'
4166	3'	-61.7	NC_001664.1	+	157602	0.68	0.557065
	Target:  5'- cCGCACAcgaGCCACG-GUCCCaGGGg -3' miRNA:   3'- aGCGUGUcacCGGUGCgCAGGGgCCC- -5'
4166	3'	-61.7	NC_001664.1	+	3725	0.7	0.491796
	Target:  5'- gCGC-CGGUGGUaccugucguCGCcUCCCCGGGu -3' miRNA:   3'- aGCGuGUCACCGgu-------GCGcAGGGGCCC- -5'
4166	3'	-61.7	NC_001664.1	+	154807	0.7	0.491796
	Target:  5'- gCGC-CGGUGGUaccugucguCGCcUCCCCGGGu -3' miRNA:   3'- aGCGuGUCACCGgu-------GCGcAGGGGCCC- -5'
4166	3'	-61.7	NC_001664.1	+	6800	1.11	0.000848
	Target:  5'- uUCGCACAGUGGCCACGCGUCCCCGGGg -3' miRNA:   3'- -AGCGUGUCACCGGUGCGCAGGGGCCC- -5'
4166	3'	-61.7	NC_001664.1	+	157882	1.11	0.000848
	Target:  5'- uUCGCACAGUGGCCACGCGUCCCCGGGg -3' miRNA:   3'- -AGCGUGUCACCGGUGCGCAGGGGCCC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home