miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4170 3' -50.6 NC_001664.1 + 2015 0.66 0.99407
Target:  5'- -aGACGAGGAggAAACggAGCaGGGCGAu -3'
miRNA:   3'- caUUGUUCCU--UUUGggUCGcCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 153097 0.66 0.99407
Target:  5'- -aGACGAGGAggAAACggAGCaGGGCGAu -3'
miRNA:   3'- caUUGUUCCU--UUUGggUCGcCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 153546 0.67 0.98963
Target:  5'- -cAGCGGGGugucGGACgaCgGGCGGGGCGGa -3'
miRNA:   3'- caUUGUUCCu---UUUG--GgUCGCCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 2465 0.67 0.98963
Target:  5'- -cAGCGGGGugucGGACgaCgGGCGGGGCGGa -3'
miRNA:   3'- caUUGUUCCu---UUUG--GgUCGCCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 637 0.68 0.980845
Target:  5'- -gGACAAGuGuaGAAACa-AGCGGGGCGAg -3'
miRNA:   3'- caUUGUUC-C--UUUUGggUCGCCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 151718 0.68 0.980845
Target:  5'- -gGACAAGuGuaGAAACa-AGCGGGGCGAg -3'
miRNA:   3'- caUUGUUC-C--UUUUGggUCGCCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 2734 0.68 0.978564
Target:  5'- cGUGACucuuucGGAAcGGgCCGGCGcGGACGAg -3'
miRNA:   3'- -CAUUGuu----CCUU-UUgGGUCGC-CCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 153816 0.68 0.978564
Target:  5'- cGUGACucuuucGGAAcGGgCCGGCGcGGACGAg -3'
miRNA:   3'- -CAUUGuu----CCUU-UUgGGUCGC-CCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 123123 0.68 0.976089
Target:  5'- cUAAUAAGGG--ACCCAGaaucuCGGGACa- -3'
miRNA:   3'- cAUUGUUCCUuuUGGGUC-----GCCCUGcu -5'
4170 3' -50.6 NC_001664.1 + 153386 0.7 0.952678
Target:  5'- -aGGCGGGGAucGGGCCCG--GGGACGGa -3'
miRNA:   3'- caUUGUUCCU--UUUGGGUcgCCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 2305 0.7 0.952678
Target:  5'- -aGGCGGGGAucGGGCCCG--GGGACGGa -3'
miRNA:   3'- caUUGUUCCU--UUUGGGUcgCCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 79993 0.7 0.95226
Target:  5'- cGUAACAGGGAgucaacaggacaaAGACCCAGagucGGAgGAg -3'
miRNA:   3'- -CAUUGUUCCU-------------UUUGGGUCgc--CCUgCU- -5'
4170 3' -50.6 NC_001664.1 + 8576 0.71 0.904935
Target:  5'- ------cGGAAAggucaaccGCCCGGCGGGGCGu -3'
miRNA:   3'- cauuguuCCUUU--------UGGGUCGCCCUGCu -5'
4170 3' -50.6 NC_001664.1 + 33784 0.73 0.845604
Target:  5'- -aGAgAAGGAAAACCCAGCauGAUGAu -3'
miRNA:   3'- caUUgUUCCUUUUGGGUCGccCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 154123 1.1 0.00821
Target:  5'- cGUAACAAGGAAAACCCAGCGGGACGAa -3'
miRNA:   3'- -CAUUGUUCCUUUUGGGUCGCCCUGCU- -5'
4170 3' -50.6 NC_001664.1 + 3041 1.1 0.00821
Target:  5'- cGUAACAAGGAAAACCCAGCGGGACGAa -3'
miRNA:   3'- -CAUUGUUCCUUUUGGGUCGCCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.