Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4170 | 3' | -50.6 | NC_001664.1 | + | 2015 | 0.66 | 0.99407 |
Target: 5'- -aGACGAGGAggAAACggAGCaGGGCGAu -3' miRNA: 3'- caUUGUUCCU--UUUGggUCGcCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 153097 | 0.66 | 0.99407 |
Target: 5'- -aGACGAGGAggAAACggAGCaGGGCGAu -3' miRNA: 3'- caUUGUUCCU--UUUGggUCGcCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 153546 | 0.67 | 0.98963 |
Target: 5'- -cAGCGGGGugucGGACgaCgGGCGGGGCGGa -3' miRNA: 3'- caUUGUUCCu---UUUG--GgUCGCCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 2465 | 0.67 | 0.98963 |
Target: 5'- -cAGCGGGGugucGGACgaCgGGCGGGGCGGa -3' miRNA: 3'- caUUGUUCCu---UUUG--GgUCGCCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 637 | 0.68 | 0.980845 |
Target: 5'- -gGACAAGuGuaGAAACa-AGCGGGGCGAg -3' miRNA: 3'- caUUGUUC-C--UUUUGggUCGCCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 151718 | 0.68 | 0.980845 |
Target: 5'- -gGACAAGuGuaGAAACa-AGCGGGGCGAg -3' miRNA: 3'- caUUGUUC-C--UUUUGggUCGCCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 2734 | 0.68 | 0.978564 |
Target: 5'- cGUGACucuuucGGAAcGGgCCGGCGcGGACGAg -3' miRNA: 3'- -CAUUGuu----CCUU-UUgGGUCGC-CCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 153816 | 0.68 | 0.978564 |
Target: 5'- cGUGACucuuucGGAAcGGgCCGGCGcGGACGAg -3' miRNA: 3'- -CAUUGuu----CCUU-UUgGGUCGC-CCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 123123 | 0.68 | 0.976089 |
Target: 5'- cUAAUAAGGG--ACCCAGaaucuCGGGACa- -3' miRNA: 3'- cAUUGUUCCUuuUGGGUC-----GCCCUGcu -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 153386 | 0.7 | 0.952678 |
Target: 5'- -aGGCGGGGAucGGGCCCG--GGGACGGa -3' miRNA: 3'- caUUGUUCCU--UUUGGGUcgCCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 2305 | 0.7 | 0.952678 |
Target: 5'- -aGGCGGGGAucGGGCCCG--GGGACGGa -3' miRNA: 3'- caUUGUUCCU--UUUGGGUcgCCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 79993 | 0.7 | 0.95226 |
Target: 5'- cGUAACAGGGAgucaacaggacaaAGACCCAGagucGGAgGAg -3' miRNA: 3'- -CAUUGUUCCU-------------UUUGGGUCgc--CCUgCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 8576 | 0.71 | 0.904935 |
Target: 5'- ------cGGAAAggucaaccGCCCGGCGGGGCGu -3' miRNA: 3'- cauuguuCCUUU--------UGGGUCGCCCUGCu -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 33784 | 0.73 | 0.845604 |
Target: 5'- -aGAgAAGGAAAACCCAGCauGAUGAu -3' miRNA: 3'- caUUgUUCCUUUUGGGUCGccCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 154123 | 1.1 | 0.00821 |
Target: 5'- cGUAACAAGGAAAACCCAGCGGGACGAa -3' miRNA: 3'- -CAUUGUUCCUUUUGGGUCGCCCUGCU- -5' |
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4170 | 3' | -50.6 | NC_001664.1 | + | 3041 | 1.1 | 0.00821 |
Target: 5'- cGUAACAAGGAAAACCCAGCGGGACGAa -3' miRNA: 3'- -CAUUGUUCCUUUUGGGUCGCCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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