miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4170 5' -58.5 NC_001664.1 + 10514 0.66 0.83882
Target:  5'- cUCCGCgagCCUGCg--CCGCgCCUCgUCg -3'
miRNA:   3'- uGGGUGa--GGAUGauaGGCG-GGAGgGG- -5'
4170 5' -58.5 NC_001664.1 + 154227 0.68 0.732036
Target:  5'- gAUCCGCUCC-GCgccccUCGCCCgauccgCCCCg -3'
miRNA:   3'- -UGGGUGAGGaUGaua--GGCGGGa-----GGGG- -5'
4170 5' -58.5 NC_001664.1 + 3145 0.68 0.732036
Target:  5'- gAUCCGCUCC-GCgccccUCGCCCgauccgCCCCg -3'
miRNA:   3'- -UGGGUGAGGaUGaua--GGCGGGa-----GGGG- -5'
4170 5' -58.5 NC_001664.1 + 455 0.68 0.702905
Target:  5'- cCCCGCUuguuUCUACacuUGUCCGCCC-CUCUa -3'
miRNA:   3'- uGGGUGA----GGAUG---AUAGGCGGGaGGGG- -5'
4170 5' -58.5 NC_001664.1 + 151537 0.68 0.702905
Target:  5'- cCCCGCUuguuUCUACacuUGUCCGCCC-CUCUa -3'
miRNA:   3'- uGGGUGA----GGAUG---AUAGGCGGGaGGGG- -5'
4170 5' -58.5 NC_001664.1 + 4149 0.68 0.693069
Target:  5'- gGCCCGC-CCUc--GUCCucauGCCCUCUCCc -3'
miRNA:   3'- -UGGGUGaGGAugaUAGG----CGGGAGGGG- -5'
4170 5' -58.5 NC_001664.1 + 155231 0.68 0.693069
Target:  5'- gGCCCGC-CCUc--GUCCucauGCCCUCUCCc -3'
miRNA:   3'- -UGGGUGaGGAugaUAGG----CGGGAGGGG- -5'
4170 5' -58.5 NC_001664.1 + 2103 0.69 0.653322
Target:  5'- uGCCCGucgaUCCccCUGUCCGUCCccgggcccgaUCCCCg -3'
miRNA:   3'- -UGGGUg---AGGauGAUAGGCGGG----------AGGGG- -5'
4170 5' -58.5 NC_001664.1 + 153185 0.69 0.653322
Target:  5'- uGCCCGucgaUCCccCUGUCCGUCCccgggcccgaUCCCCg -3'
miRNA:   3'- -UGGGUg---AGGauGAUAGGCGGG----------AGGGG- -5'
4170 5' -58.5 NC_001664.1 + 153307 0.7 0.592366
Target:  5'- cGCCCccccgcaGCUCCUuucGCUAU-CGCCCUgCUCCg -3'
miRNA:   3'- -UGGG-------UGAGGA---UGAUAgGCGGGA-GGGG- -5'
4170 5' -58.5 NC_001664.1 + 2225 0.7 0.592366
Target:  5'- cGCCCccccgcaGCUCCUuucGCUAU-CGCCCUgCUCCg -3'
miRNA:   3'- -UGGG-------UGAGGA---UGAUAgGCGGGA-GGGG- -5'
4170 5' -58.5 NC_001664.1 + 3378 0.71 0.524702
Target:  5'- aACCC-CUCCc---AUCC-CCCUCCCCg -3'
miRNA:   3'- -UGGGuGAGGaugaUAGGcGGGAGGGG- -5'
4170 5' -58.5 NC_001664.1 + 154460 0.71 0.524702
Target:  5'- aACCC-CUCCc---AUCC-CCCUCCCCg -3'
miRNA:   3'- -UGGGuGAGGaugaUAGGcGGGAGGGG- -5'
4170 5' -58.5 NC_001664.1 + 156322 0.73 0.441383
Target:  5'- uACUCACUCaCUGuCUGaCCGacauCCCUCCCCg -3'
miRNA:   3'- -UGGGUGAG-GAU-GAUaGGC----GGGAGGGG- -5'
4170 5' -58.5 NC_001664.1 + 5240 0.73 0.441383
Target:  5'- uACUCACUCaCUGuCUGaCCGacauCCCUCCCCg -3'
miRNA:   3'- -UGGGUGAG-GAU-GAUaGGC----GGGAGGGG- -5'
4170 5' -58.5 NC_001664.1 + 153401 0.74 0.390187
Target:  5'- cGCCC-CUCCgc---UCCGCCCgUCCCCc -3'
miRNA:   3'- -UGGGuGAGGaugauAGGCGGG-AGGGG- -5'
4170 5' -58.5 NC_001664.1 + 2319 0.74 0.390187
Target:  5'- cGCCC-CUCCgc---UCCGCCCgUCCCCc -3'
miRNA:   3'- -UGGGuGAGGaugauAGGCGGG-AGGGG- -5'
4170 5' -58.5 NC_001664.1 + 153487 0.83 0.107603
Target:  5'- uCCCGCUCCgUugUcUCCGCCCUCuCCCg -3'
miRNA:   3'- uGGGUGAGG-AugAuAGGCGGGAG-GGG- -5'
4170 5' -58.5 NC_001664.1 + 2405 0.83 0.107603
Target:  5'- uCCCGCUCCgUugUcUCCGCCCUCuCCCg -3'
miRNA:   3'- uGGGUGAGG-AugAuAGGCGGGAG-GGG- -5'
4170 5' -58.5 NC_001664.1 + 154157 1.12 0.001211
Target:  5'- gACCCACUCCUACUAUCCGCCCUCCCCg -3'
miRNA:   3'- -UGGGUGAGGAUGAUAGGCGGGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.