Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4171 | 3' | -64.8 | NC_001664.1 | + | 4213 | 0.66 | 0.575861 |
Target: 5'- -cGGCaGGGUCUGCgCCG-GCCCgUCGc -3' miRNA: 3'- ccCCG-CCUAGGCGaGGCgCGGGgAGC- -5' |
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4171 | 3' | -64.8 | NC_001664.1 | + | 155295 | 0.66 | 0.575861 |
Target: 5'- -cGGCaGGGUCUGCgCCG-GCCCgUCGc -3' miRNA: 3'- ccCCG-CCUAGGCGaGGCgCGGGgAGC- -5' |
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4171 | 3' | -64.8 | NC_001664.1 | + | 1436 | 0.68 | 0.441127 |
Target: 5'- aGGGCGGAuggcuUCC-CUUCGCGUUUCUCu -3' miRNA: 3'- cCCCGCCU-----AGGcGAGGCGCGGGGAGc -5' |
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4171 | 3' | -64.8 | NC_001664.1 | + | 152518 | 0.68 | 0.441127 |
Target: 5'- aGGGCGGAuggcuUCC-CUUCGCGUUUCUCu -3' miRNA: 3'- cCCCGCCU-----AGGcGAGGCGCGGGGAGc -5' |
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4171 | 3' | -64.8 | NC_001664.1 | + | 3337 | 0.74 | 0.204874 |
Target: 5'- cGGGGCGGAUCgggcgaggggCGCggagCgGaucCGCCCCUCGg -3' miRNA: 3'- -CCCCGCCUAG----------GCGa---GgC---GCGGGGAGC- -5' |
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4171 | 3' | -64.8 | NC_001664.1 | + | 154418 | 0.74 | 0.204874 |
Target: 5'- cGGGGCGGAUCgggcgaggggCGCggagCgGaucCGCCCCUCGg -3' miRNA: 3'- -CCCCGCCUAG----------GCGa---GgC---GCGGGGAGC- -5' |
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4171 | 3' | -64.8 | NC_001664.1 | + | 3138 | 1.09 | 0.000629 |
Target: 5'- aGGGGCGGAUCCGCUCCGCGCCCCUCGc -3' miRNA: 3'- -CCCCGCCUAGGCGAGGCGCGGGGAGC- -5' |
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4171 | 3' | -64.8 | NC_001664.1 | + | 154220 | 1.09 | 0.000629 |
Target: 5'- aGGGGCGGAUCCGCUCCGCGCCCCUCGc -3' miRNA: 3'- -CCCCGCCUAGGCGAGGCGCGGGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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