miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4171 5' -43.2 NC_001664.1 + 104364 0.66 1
Target:  5'- gCCGuaggccGCAAGuUCAgcauUCUCACUCa -3'
miRNA:   3'- gGGCuauuuuUGUUC-AGU----AGAGUGAG- -5'
4171 5' -43.2 NC_001664.1 + 89377 0.67 1
Target:  5'- cUCC-AUGAAAACAGcuugCAUCUCGCUg -3'
miRNA:   3'- -GGGcUAUUUUUGUUca--GUAGAGUGAg -5'
4171 5' -43.2 NC_001664.1 + 100878 0.66 1
Target:  5'- uCCCGA-AGAGGCAAaUCGcCUCACg- -3'
miRNA:   3'- -GGGCUaUUUUUGUUcAGUaGAGUGag -5'
4171 5' -43.2 NC_001664.1 + 116296 0.68 0.999999
Target:  5'- aCCGGaAAcacAAACAAGUUAUUUCugUUg -3'
miRNA:   3'- gGGCUaUU---UUUGUUCAGUAGAGugAG- -5'
4171 5' -43.2 NC_001664.1 + 116214 0.69 0.999995
Target:  5'- -gCGAUAAAAACAagcgGGUCGUUUCuauUUCg -3'
miRNA:   3'- ggGCUAUUUUUGU----UCAGUAGAGu--GAG- -5'
4171 5' -43.2 NC_001664.1 + 17807 0.69 0.99999
Target:  5'- uCCCGAUGAccagguGAC-GGUCGgagaUCUCGCUg -3'
miRNA:   3'- -GGGCUAUUu-----UUGuUCAGU----AGAGUGAg -5'
4171 5' -43.2 NC_001664.1 + 120071 0.69 0.999985
Target:  5'- uCCCag-AAAGAUGAGUCAUUUgcCGCUCa -3'
miRNA:   3'- -GGGcuaUUUUUGUUCAGUAGA--GUGAG- -5'
4171 5' -43.2 NC_001664.1 + 19380 0.7 0.999962
Target:  5'- uUCCGGguaacgGAGAACGAGaaauagAUCUCGCUCu -3'
miRNA:   3'- -GGGCUa-----UUUUUGUUCag----UAGAGUGAG- -5'
4171 5' -43.2 NC_001664.1 + 157586 0.7 0.999948
Target:  5'- gCCCGAUAccGGCAAgaucuGUCGUCUggcaaACUCg -3'
miRNA:   3'- -GGGCUAUuuUUGUU-----CAGUAGAg----UGAG- -5'
4171 5' -43.2 NC_001664.1 + 6504 0.7 0.999948
Target:  5'- gCCCGAUAccGGCAAgaucuGUCGUCUggcaaACUCg -3'
miRNA:   3'- -GGGCUAUuuUUGUU-----CAGUAGAg----UGAG- -5'
4171 5' -43.2 NC_001664.1 + 60481 0.71 0.99984
Target:  5'- gCCGAUuauAACAcaUCGUUUCACUCc -3'
miRNA:   3'- gGGCUAuuuUUGUucAGUAGAGUGAG- -5'
4171 5' -43.2 NC_001664.1 + 71084 0.76 0.992677
Target:  5'- -aCGAUAAAAGgGAGUCAUC-CGCUg -3'
miRNA:   3'- ggGCUAUUUUUgUUCAGUAGaGUGAg -5'
4171 5' -43.2 NC_001664.1 + 154256 1.16 0.025779
Target:  5'- cCCCGAUAAAAACAAGUCAUCUCACUCg -3'
miRNA:   3'- -GGGCUAUUUUUGUUCAGUAGAGUGAG- -5'
4171 5' -43.2 NC_001664.1 + 3174 1.16 0.025779
Target:  5'- cCCCGAUAAAAACAAGUCAUCUCACUCg -3'
miRNA:   3'- -GGGCUAUUUUUGUUCAGUAGAGUGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.