Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4171 | 5' | -43.2 | NC_001664.1 | + | 104364 | 0.66 | 1 |
Target: 5'- gCCGuaggccGCAAGuUCAgcauUCUCACUCa -3' miRNA: 3'- gGGCuauuuuUGUUC-AGU----AGAGUGAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 89377 | 0.67 | 1 |
Target: 5'- cUCC-AUGAAAACAGcuugCAUCUCGCUg -3' miRNA: 3'- -GGGcUAUUUUUGUUca--GUAGAGUGAg -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 100878 | 0.66 | 1 |
Target: 5'- uCCCGA-AGAGGCAAaUCGcCUCACg- -3' miRNA: 3'- -GGGCUaUUUUUGUUcAGUaGAGUGag -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 116296 | 0.68 | 0.999999 |
Target: 5'- aCCGGaAAcacAAACAAGUUAUUUCugUUg -3' miRNA: 3'- gGGCUaUU---UUUGUUCAGUAGAGugAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 116214 | 0.69 | 0.999995 |
Target: 5'- -gCGAUAAAAACAagcgGGUCGUUUCuauUUCg -3' miRNA: 3'- ggGCUAUUUUUGU----UCAGUAGAGu--GAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 17807 | 0.69 | 0.99999 |
Target: 5'- uCCCGAUGAccagguGAC-GGUCGgagaUCUCGCUg -3' miRNA: 3'- -GGGCUAUUu-----UUGuUCAGU----AGAGUGAg -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 120071 | 0.69 | 0.999985 |
Target: 5'- uCCCag-AAAGAUGAGUCAUUUgcCGCUCa -3' miRNA: 3'- -GGGcuaUUUUUGUUCAGUAGA--GUGAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 19380 | 0.7 | 0.999962 |
Target: 5'- uUCCGGguaacgGAGAACGAGaaauagAUCUCGCUCu -3' miRNA: 3'- -GGGCUa-----UUUUUGUUCag----UAGAGUGAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 157586 | 0.7 | 0.999948 |
Target: 5'- gCCCGAUAccGGCAAgaucuGUCGUCUggcaaACUCg -3' miRNA: 3'- -GGGCUAUuuUUGUU-----CAGUAGAg----UGAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 6504 | 0.7 | 0.999948 |
Target: 5'- gCCCGAUAccGGCAAgaucuGUCGUCUggcaaACUCg -3' miRNA: 3'- -GGGCUAUuuUUGUU-----CAGUAGAg----UGAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 60481 | 0.71 | 0.99984 |
Target: 5'- gCCGAUuauAACAcaUCGUUUCACUCc -3' miRNA: 3'- gGGCUAuuuUUGUucAGUAGAGUGAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 71084 | 0.76 | 0.992677 |
Target: 5'- -aCGAUAAAAGgGAGUCAUC-CGCUg -3' miRNA: 3'- ggGCUAUUUUUgUUCAGUAGaGUGAg -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 154256 | 1.16 | 0.025779 |
Target: 5'- cCCCGAUAAAAACAAGUCAUCUCACUCg -3' miRNA: 3'- -GGGCUAUUUUUGUUCAGUAGAGUGAG- -5' |
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4171 | 5' | -43.2 | NC_001664.1 | + | 3174 | 1.16 | 0.025779 |
Target: 5'- cCCCGAUAAAAACAAGUCAUCUCACUCg -3' miRNA: 3'- -GGGCUAUUUUUGUUCAGUAGAGUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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