miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4172 5' -55.6 NC_001664.1 + 14696 0.66 0.904497
Target:  5'- cGCGGgAGaCGGGAACaacaaaccuguugGUAGCGGgCAg -3'
miRNA:   3'- uCGCCgUC-GCCUUUGa------------CAUUGCCgGU- -5'
4172 5' -55.6 NC_001664.1 + 9280 0.66 0.900678
Target:  5'- cGGCGGCGGCGuc-GCggugGUGAuCGGCa- -3'
miRNA:   3'- -UCGCCGUCGCcuuUGa---CAUU-GCCGgu -5'
4172 5' -55.6 NC_001664.1 + 108951 0.66 0.900678
Target:  5'- -uUGGCAGCGGAAuacaUGUAugauuugauACGGUCu -3'
miRNA:   3'- ucGCCGUCGCCUUug--ACAU---------UGCCGGu -5'
4172 5' -55.6 NC_001664.1 + 4832 0.67 0.857944
Target:  5'- cGCGGCAGgcCGuccAAACUGU-ACGGCUAu -3'
miRNA:   3'- uCGCCGUC--GCc--UUUGACAuUGCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 155913 0.67 0.857944
Target:  5'- cGCGGCAGgcCGuccAAACUGU-ACGGCUAu -3'
miRNA:   3'- uCGCCGUC--GCc--UUUGACAuUGCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 154542 0.67 0.850062
Target:  5'- gAGCGGgGGUGGGAgggaaGgUGgAugGGCCGg -3'
miRNA:   3'- -UCGCCgUCGCCUU-----UgACaUugCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 3461 0.67 0.850062
Target:  5'- gAGCGGgGGUGGGAgggaaGgUGgAugGGCCGg -3'
miRNA:   3'- -UCGCCgUCGCCUU-----UgACaUugCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 1629 0.68 0.833702
Target:  5'- gAGCGGgAGCGGcGA----GGCGGCCGg -3'
miRNA:   3'- -UCGCCgUCGCCuUUgacaUUGCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 152710 0.68 0.833702
Target:  5'- gAGCGGgAGCGGcGA----GGCGGCCGg -3'
miRNA:   3'- -UCGCCgUCGCCuUUgacaUUGCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 153553 0.69 0.798809
Target:  5'- cAGCGGaCAGCGGGGugUcGgacGACGGgCGg -3'
miRNA:   3'- -UCGCC-GUCGCCUUugA-Ca--UUGCCgGU- -5'
4172 5' -55.6 NC_001664.1 + 2472 0.69 0.798809
Target:  5'- cAGCGGaCAGCGGGGugUcGgacGACGGgCGg -3'
miRNA:   3'- -UCGCC-GUCGCCUUugA-Ca--UUGCCgGU- -5'
4172 5' -55.6 NC_001664.1 + 1053 0.69 0.789682
Target:  5'- cAGCGGUAGCaacuuGCUGU--CGGCCGa -3'
miRNA:   3'- -UCGCCGUCGccuu-UGACAuuGCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 152135 0.69 0.789682
Target:  5'- cAGCGGUAGCaacuuGCUGU--CGGCCGa -3'
miRNA:   3'- -UCGCCGUCGccuu-UGACAuuGCCGGU- -5'
4172 5' -55.6 NC_001664.1 + 154575 0.69 0.780409
Target:  5'- cGGCGGCGGCGGuugucGCcGUcACGGUa- -3'
miRNA:   3'- -UCGCCGUCGCCuu---UGaCAuUGCCGgu -5'
4172 5' -55.6 NC_001664.1 + 3493 0.69 0.780409
Target:  5'- cGGCGGCGGCGGuugucGCcGUcACGGUa- -3'
miRNA:   3'- -UCGCCGUCGCCuu---UGaCAuUGCCGgu -5'
4172 5' -55.6 NC_001664.1 + 3042 0.7 0.742061
Target:  5'- cGGUGGUGGCGGAGGCggugcgcgagGUGGgGGCg- -3'
miRNA:   3'- -UCGCCGUCGCCUUUGa---------CAUUgCCGgu -5'
4172 5' -55.6 NC_001664.1 + 154124 0.7 0.742061
Target:  5'- cGGUGGUGGCGGAGGCggugcgcgagGUGGgGGCg- -3'
miRNA:   3'- -UCGCCGUCGCCUUUGa---------CAUUgCCGgu -5'
4172 5' -55.6 NC_001664.1 + 152947 0.7 0.722263
Target:  5'- cGGCGGUAGCGGAcgagGACaccgcgaUGACGGCg- -3'
miRNA:   3'- -UCGCCGUCGCCU----UUGac-----AUUGCCGgu -5'
4172 5' -55.6 NC_001664.1 + 1866 0.7 0.722263
Target:  5'- cGGCGGUAGCGGAcgagGACaccgcgaUGACGGCg- -3'
miRNA:   3'- -UCGCCGUCGCCU----UUGac-----AUUGCCGgu -5'
4172 5' -55.6 NC_001664.1 + 2801 0.7 0.702149
Target:  5'- uGUGuGCGGCGGGcGGCUGUGACuuGCCGa -3'
miRNA:   3'- uCGC-CGUCGCCU-UUGACAUUGc-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.