miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4173 5' -58.2 NC_001664.1 + 4815 0.66 0.808139
Target:  5'- --aCUGGCuGCuccUGGCCCGCGGCa -3'
miRNA:   3'- aagGACUGuCGuccAUCGGGCGCUGg -5'
4173 5' -58.2 NC_001664.1 + 155896 0.66 0.808139
Target:  5'- --aCUGGCuGCuccUGGCCCGCGGCa -3'
miRNA:   3'- aagGACUGuCGuccAUCGGGCGCUGg -5'
4173 5' -58.2 NC_001664.1 + 6434 0.66 0.816803
Target:  5'- -aCCUG-CGGCAcGGUcagagucauGCgCGCGGCCg -3'
miRNA:   3'- aaGGACuGUCGU-CCAu--------CGgGCGCUGG- -5'
4173 5' -58.2 NC_001664.1 + 157515 0.66 0.816803
Target:  5'- -aCCUG-CGGCAcGGUcagagucauGCgCGCGGCCg -3'
miRNA:   3'- aaGGACuGUCGU-CCAu--------CGgGCGCUGG- -5'
4173 5' -58.2 NC_001664.1 + 6505 0.69 0.632751
Target:  5'- gUCC---CAGgGGGUGGCCCGCGuacagguGCCg -3'
miRNA:   3'- aAGGacuGUCgUCCAUCGGGCGC-------UGG- -5'
4173 5' -58.2 NC_001664.1 + 157586 0.69 0.632751
Target:  5'- gUCC---CAGgGGGUGGCCCGCGuacagguGCCg -3'
miRNA:   3'- aAGGacuGUCgUCCAUCGGGCGC-------UGG- -5'
4173 5' -58.2 NC_001664.1 + 3812 1.09 0.001754
Target:  5'- cUUCCUGACAGCAGGUAGCCCGCGACCu -3'
miRNA:   3'- -AAGGACUGUCGUCCAUCGGGCGCUGG- -5'
4173 5' -58.2 NC_001664.1 + 154893 1.09 0.001754
Target:  5'- cUUCCUGACAGCAGGUAGCCCGCGACCu -3'
miRNA:   3'- -AAGGACUGUCGUCCAUCGGGCGCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.