miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4175 3' -55.8 NC_001664.1 + 71647 0.66 0.919787
Target:  5'- uUUCCCGGGGaAUGUuucGACAU-CGGCAUu -3'
miRNA:   3'- uAAGGGCCUC-UACG---CUGUGcGCUGUG- -5'
4175 3' -55.8 NC_001664.1 + 4280 1.08 0.003275
Target:  5'- gAUUCCCGGAGAUGCGACACGCGACACa -3'
miRNA:   3'- -UAAGGGCCUCUACGCUGUGCGCUGUG- -5'
4175 3' -55.8 NC_001664.1 + 155362 1.08 0.003275
Target:  5'- gAUUCCCGGAGAUGCGACACGCGACACa -3'
miRNA:   3'- -UAAGGGCCUCUACGCUGUGCGCUGUG- -5'
4175 3' -55.8 NC_001664.1 + 6615 0.7 0.693921
Target:  5'- --cCCCGGGGAcgcguggccacugUGCGaACACGUGAgACc -3'
miRNA:   3'- uaaGGGCCUCU-------------ACGC-UGUGCGCUgUG- -5'
4175 3' -55.8 NC_001664.1 + 157696 0.7 0.693921
Target:  5'- --cCCCGGGGAcgcguggccacugUGCGaACACGUGAgACc -3'
miRNA:   3'- uaaGGGCCUCU-------------ACGC-UGUGCGCUgUG- -5'
4175 3' -55.8 NC_001664.1 + 12260 0.7 0.724991
Target:  5'- --gCCCGGAGA-GCGAC-CGCcucACGCg -3'
miRNA:   3'- uaaGGGCCUCUaCGCUGuGCGc--UGUG- -5'
4175 3' -55.8 NC_001664.1 + 142566 0.69 0.78268
Target:  5'- -aUCCCuGAaAUGUGGCACG-GACACg -3'
miRNA:   3'- uaAGGGcCUcUACGCUGUGCgCUGUG- -5'
4175 3' -55.8 NC_001664.1 + 136266 0.69 0.78268
Target:  5'- -aUUCCGaAGGUGUGAC-UGCGGCGCu -3'
miRNA:   3'- uaAGGGCcUCUACGCUGuGCGCUGUG- -5'
4175 3' -55.8 NC_001664.1 + 3535 0.66 0.908006
Target:  5'- --aCCCGGGGAgGCGACgacagguaccAC-CGGCGCc -3'
miRNA:   3'- uaaGGGCCUCUaCGCUG----------UGcGCUGUG- -5'
4175 3' -55.8 NC_001664.1 + 154617 0.66 0.908006
Target:  5'- --aCCCGGGGAgGCGACgacagguaccAC-CGGCGCc -3'
miRNA:   3'- uaaGGGCCUCUaCGCUG----------UGcGCUGUG- -5'
4175 3' -55.8 NC_001664.1 + 8333 0.66 0.908006
Target:  5'- cGUUCCCgaGGAGGgcccGCG-CGCGCGAgAg -3'
miRNA:   3'- -UAAGGG--CCUCUa---CGCuGUGCGCUgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.