miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4177 3' -56.4 NC_001664.1 + 8490 0.66 0.911922
Target:  5'- -cGCGCCCCcaCCGAgcAGA--CUGCCa -3'
miRNA:   3'- acUGCGGGGcaGGCU--UCUuaGACGGc -5'
4177 3' -56.4 NC_001664.1 + 127700 0.66 0.904697
Target:  5'- uUGAgGCCCUGcuagaaucccugCUGGAGGcUCUGCUGg -3'
miRNA:   3'- -ACUgCGGGGCa-----------GGCUUCUuAGACGGC- -5'
4177 3' -56.4 NC_001664.1 + 115077 0.66 0.891265
Target:  5'- gGugGCUUCGUUaucagaaagacgcuUGGAGGggcGUCUGCCGg -3'
miRNA:   3'- aCugCGGGGCAG--------------GCUUCU---UAGACGGC- -5'
4177 3' -56.4 NC_001664.1 + 47355 0.67 0.872561
Target:  5'- gGAaGCUCUGUCCGAGGGuuUCUGgCUGu -3'
miRNA:   3'- aCUgCGGGGCAGGCUUCUu-AGAC-GGC- -5'
4177 3' -56.4 NC_001664.1 + 127844 0.67 0.857714
Target:  5'- gGAgGCUCUG-CUGGAGGcUCUGCUGg -3'
miRNA:   3'- aCUgCGGGGCaGGCUUCUuAGACGGC- -5'
4177 3' -56.4 NC_001664.1 + 4516 0.67 0.849989
Target:  5'- cGACGCCCC--CgGggGAaccgcGUCUGCgGa -3'
miRNA:   3'- aCUGCGGGGcaGgCuuCU-----UAGACGgC- -5'
4177 3' -56.4 NC_001664.1 + 155597 0.67 0.849989
Target:  5'- cGACGCCCC--CgGggGAaccgcGUCUGCgGa -3'
miRNA:   3'- aCUGCGGGGcaGgCuuCU-----UAGACGgC- -5'
4177 3' -56.4 NC_001664.1 + 6045 0.68 0.833966
Target:  5'- cGACGCCgugaCGUauGAAGAAgaccuagagCUGCCGg -3'
miRNA:   3'- aCUGCGGg---GCAggCUUCUUa--------GACGGC- -5'
4177 3' -56.4 NC_001664.1 + 157127 0.68 0.833966
Target:  5'- cGACGCCgugaCGUauGAAGAAgaccuagagCUGCCGg -3'
miRNA:   3'- aCUGCGGg---GCAggCUUCUUa--------GACGGC- -5'
4177 3' -56.4 NC_001664.1 + 127437 0.69 0.781845
Target:  5'- gGAaGCCCUG-CUGGAGGcUCUGCUGg -3'
miRNA:   3'- aCUgCGGGGCaGGCUUCUuAGACGGC- -5'
4177 3' -56.4 NC_001664.1 + 127653 0.69 0.781845
Target:  5'- gGAaGCCCUG-CUGGAGGcUCUGCUGg -3'
miRNA:   3'- aCUgCGGGGCaGGCUUCUuAGACGGC- -5'
4177 3' -56.4 NC_001664.1 + 6168 0.69 0.763333
Target:  5'- cGACGCCa-GUCgGcAGAGUCUuGCCGc -3'
miRNA:   3'- aCUGCGGggCAGgCuUCUUAGA-CGGC- -5'
4177 3' -56.4 NC_001664.1 + 157250 0.69 0.763333
Target:  5'- cGACGCCa-GUCgGcAGAGUCUuGCCGc -3'
miRNA:   3'- aCUGCGGggCAGgCuUCUUAGA-CGGC- -5'
4177 3' -56.4 NC_001664.1 + 9071 1.09 0.002884
Target:  5'- gUGACGCCCCGUCCGAAGAAUCUGCCGa -3'
miRNA:   3'- -ACUGCGGGGCAGGCUUCUUAGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.