miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4177 5' -61.6 NC_001664.1 + 159266 0.66 0.690546
Target:  5'- gGCGuGCGCgCGCgCGuuGGGggAUGGGUUa -3'
miRNA:   3'- gCGC-UGCG-GCG-GCggCCCa-UACUCGG- -5'
4177 5' -61.6 NC_001664.1 + 159093 0.67 0.632466
Target:  5'- gCGCGcGCGCaCGCCGCUauGGGag-GcGCCg -3'
miRNA:   3'- -GCGC-UGCG-GCGGCGG--CCCauaCuCGG- -5'
4177 5' -61.6 NC_001664.1 + 158667 0.69 0.517558
Target:  5'- gCGCGACguGCCaCCGCUGGGacccacgGUG-GCCu -3'
miRNA:   3'- -GCGCUG--CGGcGGCGGCCCa------UACuCGG- -5'
4177 5' -61.6 NC_001664.1 + 156043 0.68 0.603325
Target:  5'- uGUGGgGCCaCCGCUGGGguu-GGCCa -3'
miRNA:   3'- gCGCUgCGGcGGCGGCCCauacUCGG- -5'
4177 5' -61.6 NC_001664.1 + 155308 0.69 0.526885
Target:  5'- gGCuuUGCCGCCGCggcaGGGUcUGcGCCg -3'
miRNA:   3'- gCGcuGCGGCGGCGg---CCCAuACuCGG- -5'
4177 5' -61.6 NC_001664.1 + 154681 0.69 0.508298
Target:  5'- uGCGGuCGCCGCCucugcggacggaGUCGGcGUGUGuGCUc -3'
miRNA:   3'- gCGCU-GCGGCGG------------CGGCC-CAUACuCGG- -5'
4177 5' -61.6 NC_001664.1 + 154182 0.68 0.592674
Target:  5'- uGCGuGCGCCggacucuGCUGCUGGGUGUGuaugggGGCg -3'
miRNA:   3'- gCGC-UGCGG-------CGGCGGCCCAUAC------UCGg -5'
4177 5' -61.6 NC_001664.1 + 154067 0.69 0.517558
Target:  5'- gGCGACGgaGcCCGCUGGGUAUcgcggaagugcGAGaCCg -3'
miRNA:   3'- gCGCUGCggC-GGCGGCCCAUA-----------CUC-GG- -5'
4177 5' -61.6 NC_001664.1 + 152717 0.68 0.603325
Target:  5'- aGCGGCGagGCgGCCGGa---GAGCCg -3'
miRNA:   3'- gCGCUGCggCGgCGGCCcauaCUCGG- -5'
4177 5' -61.6 NC_001664.1 + 35767 0.66 0.709635
Target:  5'- uCG-GACGCCGCCGCCGuccuauucagaGGUGcUGAugauggacGUCa -3'
miRNA:   3'- -GCgCUGCGGCGGCGGC-----------CCAU-ACU--------CGG- -5'
4177 5' -61.6 NC_001664.1 + 9105 1.12 0.000736
Target:  5'- cCGCGACGCCGCCGCCGGGUAUGAGCCg -3'
miRNA:   3'- -GCGCUGCGGCGGCGGCCCAUACUCGG- -5'
4177 5' -61.6 NC_001664.1 + 8380 0.67 0.661602
Target:  5'- gCGCguagaGACGCC-CCGCCGGGcgguUGA-CCu -3'
miRNA:   3'- -GCG-----CUGCGGcGGCGGCCCau--ACUcGG- -5'
4177 5' -61.6 NC_001664.1 + 8184 0.66 0.690546
Target:  5'- gGCGuGCGCgCGCgCGuuGGGggAUGGGUUa -3'
miRNA:   3'- gCGC-UGCG-GCG-GCggCCCa-UACUCGG- -5'
4177 5' -61.6 NC_001664.1 + 8011 0.67 0.632466
Target:  5'- gCGCGcGCGCaCGCCGCUauGGGag-GcGCCg -3'
miRNA:   3'- -GCGC-UGCG-GCGGCGG--CCCauaCuCGG- -5'
4177 5' -61.6 NC_001664.1 + 4962 0.68 0.603325
Target:  5'- uGUGGgGCCaCCGCUGGGguu-GGCCa -3'
miRNA:   3'- gCGCUgCGGcGGCGGCCCauacUCGG- -5'
4177 5' -61.6 NC_001664.1 + 4226 0.69 0.526885
Target:  5'- gGCuuUGCCGCCGCggcaGGGUcUGcGCCg -3'
miRNA:   3'- gCGcuGCGGCGGCGg---CCCAuACuCGG- -5'
4177 5' -61.6 NC_001664.1 + 3600 0.69 0.508298
Target:  5'- uGCGGuCGCCGCCucugcggacggaGUCGGcGUGUGuGCUc -3'
miRNA:   3'- gCGCU-GCGGCGG------------CGGCC-CAUACuCGG- -5'
4177 5' -61.6 NC_001664.1 + 3100 0.68 0.592674
Target:  5'- uGCGuGCGCCggacucuGCUGCUGGGUGUGuaugggGGCg -3'
miRNA:   3'- gCGC-UGCGG-------CGGCGGCCCAUAC------UCGg -5'
4177 5' -61.6 NC_001664.1 + 2985 0.69 0.517558
Target:  5'- gGCGACGgaGcCCGCUGGGUAUcgcggaagugcGAGaCCg -3'
miRNA:   3'- gCGCUGCggC-GGCGGCCCAUA-----------CUC-GG- -5'
4177 5' -61.6 NC_001664.1 + 1636 0.68 0.603325
Target:  5'- aGCGGCGagGCgGCCGGa---GAGCCg -3'
miRNA:   3'- gCGCUGCggCGgCGGCCcauaCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.