miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4179 3' -60.5 NC_001664.1 + 158665 0.66 0.748855
Target:  5'- gCGCGCGaCGUgccaCCGCUGggacccACGGUGGCCu -3'
miRNA:   3'- -GUGUGCaGCA----GGCGGC------UGUCGCCGGc -5'
4179 3' -60.5 NC_001664.1 + 154487 0.7 0.536729
Target:  5'- aCACACGccgacucCGUCCGCagaGGCGGCGaCCGc -3'
miRNA:   3'- -GUGUGCa------GCAGGCGg--CUGUCGCcGGC- -5'
4179 3' -60.5 NC_001664.1 + 153903 0.68 0.614025
Target:  5'- uCGCGCGgCGUCucaCGCCGuguguGCGGCGGgCGg -3'
miRNA:   3'- -GUGUGCaGCAG---GCGGC-----UGUCGCCgGC- -5'
4179 3' -60.5 NC_001664.1 + 152981 0.71 0.454239
Target:  5'- gACGgGUCgGUCCGCgcguCGACGucGCGGCCGu -3'
miRNA:   3'- gUGUgCAG-CAGGCG----GCUGU--CGCCGGC- -5'
4179 3' -60.5 NC_001664.1 + 11811 0.66 0.73021
Target:  5'- --aACGUCGUUCcuuacgcuguGCgCGGCGGCGGCuCGu -3'
miRNA:   3'- gugUGCAGCAGG----------CG-GCUGUCGCCG-GC- -5'
4179 3' -60.5 NC_001664.1 + 11013 0.67 0.692053
Target:  5'- gACAUaGUCGuUCUGCuCGGCGGC-GCCGg -3'
miRNA:   3'- gUGUG-CAGC-AGGCG-GCUGUCGcCGGC- -5'
4179 3' -60.5 NC_001664.1 + 9622 1.09 0.001479
Target:  5'- cCACACGUCGUCCGCCGACAGCGGCCGg -3'
miRNA:   3'- -GUGUGCAGCAGGCGGCUGUCGCCGGC- -5'
4179 3' -60.5 NC_001664.1 + 3405 0.7 0.536729
Target:  5'- aCACACGccgacucCGUCCGCagaGGCGGCGaCCGc -3'
miRNA:   3'- -GUGUGCa------GCAGGCGg--CUGUCGCcGGC- -5'
4179 3' -60.5 NC_001664.1 + 2821 0.68 0.614025
Target:  5'- uCGCGCGgCGUCucaCGCCGuguguGCGGCGGgCGg -3'
miRNA:   3'- -GUGUGCaGCAG---GCGGC-----UGUCGCCgGC- -5'
4179 3' -60.5 NC_001664.1 + 1899 0.71 0.454239
Target:  5'- gACGgGUCgGUCCGCgcguCGACGucGCGGCCGu -3'
miRNA:   3'- gUGUgCAG-CAGGCG----GCUGU--CGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.