miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4179 5' -50.6 NC_001664.1 + 2204 0.66 0.993424
Target:  5'- cGACGAcgaGCCGUCCGUccgcCCUCgGu -3'
miRNA:   3'- -UUGCUug-CGGCAGGUAaauuGGAGgC- -5'
4179 5' -50.6 NC_001664.1 + 6401 0.7 0.949793
Target:  5'- --gGAAcCGCCGUCCAcg-GAUCUCCc -3'
miRNA:   3'- uugCUU-GCGGCAGGUaaaUUGGAGGc -5'
4179 5' -50.6 NC_001664.1 + 8496 0.67 0.991288
Target:  5'- gAACGAccGCgGCCGUUCucucu-CCUCCGg -3'
miRNA:   3'- -UUGCU--UG-CGGCAGGuaaauuGGAGGC- -5'
4179 5' -50.6 NC_001664.1 + 9653 0.67 0.990032
Target:  5'- uACGGAUGCUGUCCcgguaugGAUCUCaCGg -3'
miRNA:   3'- uUGCUUGCGGCAGGuaaa---UUGGAG-GC- -5'
4179 5' -50.6 NC_001664.1 + 9663 1.08 0.011132
Target:  5'- gAACGAACGCCGUCCAUUUAACCUCCGg -3'
miRNA:   3'- -UUGCUUGCGGCAGGUAAAUUGGAGGC- -5'
4179 5' -50.6 NC_001664.1 + 10663 0.8 0.493694
Target:  5'- uGCGGACGCCGUCCAccucgggguCCUCCa -3'
miRNA:   3'- uUGCUUGCGGCAGGUaaauu----GGAGGc -5'
4179 5' -50.6 NC_001664.1 + 12193 0.66 0.993424
Target:  5'- aAugGAGCGuuGcaucgauaCCGUUucUGGCCUCCGc -3'
miRNA:   3'- -UugCUUGCggCa-------GGUAA--AUUGGAGGC- -5'
4179 5' -50.6 NC_001664.1 + 63252 0.66 0.99644
Target:  5'- uGACGAGCGCUuguacguugGcUCCAUUUAugugucuCCUUCGa -3'
miRNA:   3'- -UUGCUUGCGG---------C-AGGUAAAUu------GGAGGC- -5'
4179 5' -50.6 NC_001664.1 + 127775 0.68 0.979286
Target:  5'- aAGCGAA-GCC-UCCAgcagAGCCUCCa -3'
miRNA:   3'- -UUGCUUgCGGcAGGUaaa-UUGGAGGc -5'
4179 5' -50.6 NC_001664.1 + 153286 0.66 0.993424
Target:  5'- cGACGAcgaGCCGUCCGUccgcCCUCgGu -3'
miRNA:   3'- -UUGCUug-CGGCAGGUAaauuGGAGgC- -5'
4179 5' -50.6 NC_001664.1 + 157482 0.7 0.949793
Target:  5'- --gGAAcCGCCGUCCAcg-GAUCUCCc -3'
miRNA:   3'- uugCUU-GCGGCAGGUaaaUUGGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.