Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
418 | 3' | -59.7 | AC_000011.1 | + | 3509 | 0.72 | 0.136514 |
Target: 5'- gGAGGGGUauUCAGCCCUuaucugacggGGCgucUCCCCUc -3' miRNA: 3'- aCUCCUCG--AGUUGGGG----------CCGa--AGGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 6464 | 0.68 | 0.27367 |
Target: 5'- cGAGGucauGCUgGACCCCcuGC--CCCCCu -3' miRNA: 3'- aCUCCu---CGAgUUGGGGc-CGaaGGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 7525 | 0.69 | 0.23384 |
Target: 5'- cGAGGAGCUCAagaaacuGCCCCacgucaagGGCcgUCCgCg -3' miRNA: 3'- aCUCCUCGAGU-------UGGGG--------CCGa-AGGgGg -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 7718 | 0.72 | 0.140358 |
Target: 5'- aGGGcGAGCUCGACgagCCGGUcgUCCCCg -3' miRNA: 3'- aCUC-CUCGAGUUGg--GGCCGa-AGGGGg -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 9168 | 0.66 | 0.379748 |
Target: 5'- gGAuGAGCUCGgcgaugguggcgcgcACCUCGcGCUcgaaggCCCCCg -3' miRNA: 3'- aCUcCUCGAGU---------------UGGGGC-CGAa-----GGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 10245 | 0.73 | 0.115416 |
Target: 5'- cGAGGAcCUC-GCgCCCGGCg-CCCCCg -3' miRNA: 3'- aCUCCUcGAGuUG-GGGCCGaaGGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 13683 | 0.74 | 0.109086 |
Target: 5'- cGGGcGGCgcuGCCCCGGCUcguggCCCCCu -3' miRNA: 3'- aCUCcUCGaguUGGGGCCGAa----GGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 20308 | 0.69 | 0.236913 |
Target: 5'- cUGGGcuccGGGUUCGACCCCuacuucgucuacucgGGCUccaUCCCCUa -3' miRNA: 3'- -ACUC----CUCGAGUUGGGG---------------CCGA---AGGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 21135 | 0.68 | 0.298141 |
Target: 5'- aGcAGGAGCUCAgggccaucauccgcgACCUgGGCUgcgggCCCUa -3' miRNA: 3'- aC-UCCUCGAGU---------------UGGGgCCGAa----GGGGg -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 21418 | 0.66 | 0.37621 |
Target: 5'- cGAGGAccGCUgCGucACCCUGGaaaagUCCaCCCa -3' miRNA: 3'- aCUCCU--CGA-GU--UGGGGCCga---AGG-GGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 22769 | 0.66 | 0.37621 |
Target: 5'- cGAGGAGC---ACCgCGGCaUUCCgCUg -3' miRNA: 3'- aCUCCUCGaguUGGgGCCG-AAGGgGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 22993 | 0.66 | 0.358859 |
Target: 5'- gGGGGuAGCUgaAGCCCaCGGCcgccagcUCCUCCu -3' miRNA: 3'- aCUCC-UCGAg-UUGGG-GCCGa------AGGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 23001 | 0.68 | 0.295177 |
Target: 5'- aGcGGAGCUUugaGACCCUGGaCgagagcgaCCCCCu -3' miRNA: 3'- aCuCCUCGAG---UUGGGGCC-Gaa------GGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 23063 | 0.73 | 0.128754 |
Target: 5'- gGAGGAGCUggCGGCCgUgGGCUUcagcuacCCCCCg -3' miRNA: 3'- aCUCCUCGA--GUUGG-GgCCGAA-------GGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 23777 | 0.68 | 0.269523 |
Target: 5'- gGAGGAGCUCAGCCgCGcCUacgaguugaaccucuUCUCgCCg -3' miRNA: 3'- aCUCCUCGAGUUGGgGCcGA---------------AGGG-GG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 25469 | 1.12 | 0.000129 |
Target: 5'- gUGAGGAGCUCAACCCCGGCUUCCCCCa -3' miRNA: 3'- -ACUCCUCGAGUUGGGGCCGAAGGGGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 26442 | 0.66 | 0.37621 |
Target: 5'- aUGuGGAGCUacCAGCCCCagaugGGCcuggCCgCCg -3' miRNA: 3'- -ACuCCUCGA--GUUGGGG-----CCGaa--GGgGG- -5' |
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418 | 3' | -59.7 | AC_000011.1 | + | 26980 | 0.73 | 0.129114 |
Target: 5'- gGAGGAGUUCAcucccucggucuACUucaaccccuucuCCGGC-UCCCCCg -3' miRNA: 3'- aCUCCUCGAGU------------UGG------------GGCCGaAGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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