miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4182 3' -56.5 NC_001664.1 + 6796 0.66 0.869618
Target:  5'- cACAGUGGCCaCG-CGUCcCCGGgGAGa -3'
miRNA:   3'- -UGUUACCGGgGUgGUAGaGGCCgUUC- -5'
4182 3' -56.5 NC_001664.1 + 157878 0.66 0.869618
Target:  5'- cACAGUGGCCaCG-CGUCcCCGGgGAGa -3'
miRNA:   3'- -UGUUACCGGgGUgGUAGaGGCCgUUC- -5'
4182 3' -56.5 NC_001664.1 + 9121 0.68 0.77669
Target:  5'- gGguAUGaGCCgCCACCucuUCUCCGGCc-- -3'
miRNA:   3'- -UguUAC-CGG-GGUGGu--AGAGGCCGuuc -5'
4182 3' -56.5 NC_001664.1 + 3164 0.71 0.596517
Target:  5'- uGCAcgGGCUCCGuuAcCUCCGGCGGu -3'
miRNA:   3'- -UGUuaCCGGGGUggUaGAGGCCGUUc -5'
4182 3' -56.5 NC_001664.1 + 154246 0.71 0.596517
Target:  5'- uGCAcgGGCUCCGuuAcCUCCGGCGGu -3'
miRNA:   3'- -UGUuaCCGGGGUggUaGAGGCCGUUc -5'
4182 3' -56.5 NC_001664.1 + 5134 0.72 0.55596
Target:  5'- aGCGGUGGCCCCACaCGguggcacUUCUGGCGu- -3'
miRNA:   3'- -UGUUACCGGGGUG-GUa------GAGGCCGUuc -5'
4182 3' -56.5 NC_001664.1 + 156216 0.72 0.55596
Target:  5'- aGCGGUGGCCCCACaCGguggcacUUCUGGCGu- -3'
miRNA:   3'- -UGUUACCGGGGUG-GUa------GAGGCCGUuc -5'
4182 3' -56.5 NC_001664.1 + 25024 1.09 0.002597
Target:  5'- cACAAUGGCCCCACCAUCUCCGGCAAGa -3'
miRNA:   3'- -UGUUACCGGGGUGGUAGAGGCCGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.