miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4182 5' -58 NC_001664.1 + 152595 0.66 0.832196
Target:  5'- cGCCCGCgUCuccAGucCGuCAGGACCAG-Cu -3'
miRNA:   3'- aCGGGCGgAG---UCu-GC-GUCUUGGUCuG- -5'
4182 5' -58 NC_001664.1 + 1514 0.66 0.832196
Target:  5'- cGCCCGCgUCuccAGucCGuCAGGACCAG-Cu -3'
miRNA:   3'- aCGGGCGgAG---UCu-GC-GUCUUGGUCuG- -5'
4182 5' -58 NC_001664.1 + 102387 0.66 0.806599
Target:  5'- aGCCCGaCCUUAcguuGGCgGCGGucuAUCAGGCg -3'
miRNA:   3'- aCGGGC-GGAGU----CUG-CGUCu--UGGUCUG- -5'
4182 5' -58 NC_001664.1 + 156082 0.67 0.751432
Target:  5'- gGCCUGCCgCGGGC-CAGGagcaGCCAGuCg -3'
miRNA:   3'- aCGGGCGGaGUCUGcGUCU----UGGUCuG- -5'
4182 5' -58 NC_001664.1 + 5000 0.67 0.751432
Target:  5'- gGCCUGCCgCGGGC-CAGGagcaGCCAGuCg -3'
miRNA:   3'- aCGGGCGGaGUCUGcGUCU----UGGUCuG- -5'
4182 5' -58 NC_001664.1 + 15383 0.69 0.67242
Target:  5'- gUGCCCGuUCUCAGGCugaaccgaauuGCAGAGCUgcuaucguuauGGGCu -3'
miRNA:   3'- -ACGGGC-GGAGUCUG-----------CGUCUUGG-----------UCUG- -5'
4182 5' -58 NC_001664.1 + 155150 0.69 0.662305
Target:  5'- aGuCCCGCCUCAuGgGCGGAACaagggAGACc -3'
miRNA:   3'- aC-GGGCGGAGUcUgCGUCUUGg----UCUG- -5'
4182 5' -58 NC_001664.1 + 4068 0.69 0.662305
Target:  5'- aGuCCCGCCUCAuGgGCGGAACaagggAGACc -3'
miRNA:   3'- aC-GGGCGGAGUcUgCGUCUUGg----UCUG- -5'
4182 5' -58 NC_001664.1 + 97016 0.7 0.581197
Target:  5'- -uCCgGCCUaGGACGUacAGAACCAGAUa -3'
miRNA:   3'- acGGgCGGAgUCUGCG--UCUUGGUCUG- -5'
4182 5' -58 NC_001664.1 + 49605 0.72 0.45543
Target:  5'- aUGCCCGCCUCAGGauu-GAACgGGAa -3'
miRNA:   3'- -ACGGGCGGAGUCUgcguCUUGgUCUg -5'
4182 5' -58 NC_001664.1 + 157251 0.73 0.402457
Target:  5'- gGCCUGUgUCAGACGCAc-GCCGGAg -3'
miRNA:   3'- aCGGGCGgAGUCUGCGUcuUGGUCUg -5'
4182 5' -58 NC_001664.1 + 6169 0.73 0.402457
Target:  5'- gGCCUGUgUCAGACGCAc-GCCGGAg -3'
miRNA:   3'- aCGGGCGgAGUCUGCGUcuUGGUCUg -5'
4182 5' -58 NC_001664.1 + 25062 1.1 0.001472
Target:  5'- aUGCCCGCCUCAGACGCAGAACCAGACg -3'
miRNA:   3'- -ACGGGCGGAGUCUGCGUCUUGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.