miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4183 3' -49.8 NC_001664.1 + 37854 0.69 0.977221
Target:  5'- uGACAGAggGGAGGUCcCCCCuCGGAc- -3'
miRNA:   3'- uUUGUUUa-CUUUCAGaGGGG-GCCUca -5'
4183 3' -49.8 NC_001664.1 + 50875 0.66 0.994608
Target:  5'- aGGACAGAuUGGAAGUCUUuaUCgUGGAGUa -3'
miRNA:   3'- -UUUGUUU-ACUUUCAGAG--GGgGCCUCA- -5'
4183 3' -49.8 NC_001664.1 + 98436 0.66 0.995384
Target:  5'- gGAACAGGUc-GAGUCUUugCCUCGGAGg -3'
miRNA:   3'- -UUUGUUUAcuUUCAGAG--GGGGCCUCa -5'
4183 3' -49.8 NC_001664.1 + 117732 1.06 0.015528
Target:  5'- aAAACAAAUGAAAGUCUCCCCCGGAGUa -3'
miRNA:   3'- -UUUGUUUACUUUCAGAGGGGGCCUCA- -5'
4183 3' -49.8 NC_001664.1 + 117953 0.69 0.968672
Target:  5'- -uGCAuuuuUG-AGGUUUCCCCCcGGAGUa -3'
miRNA:   3'- uuUGUuu--ACuUUCAGAGGGGG-CCUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.