miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4184 3' -57.8 NC_001664.1 + 1740 1.1 0.002443
Target:  5'- uCCGACACGGGUGACGCGUAAGGGGCGu -3'
miRNA:   3'- -GGCUGUGCCCACUGCGCAUUCCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 149061 0.66 0.882512
Target:  5'- uUGAUACGuaUG-CGCGUAcAGGGGUGu -3'
miRNA:   3'- gGCUGUGCccACuGCGCAU-UCCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 8165 0.67 0.830359
Target:  5'- cCCGAaagaGCGGacGACG-GUAuAGGGGCGg -3'
miRNA:   3'- -GGCUg---UGCCcaCUGCgCAU-UCCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 155398 0.7 0.674784
Target:  5'- uUGACAuCGGGguccgcaGACGCGguucccccGGGGGCGu -3'
miRNA:   3'- gGCUGU-GCCCa------CUGCGCau------UCCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 4316 0.7 0.674784
Target:  5'- uUGACAuCGGGguccgcaGACGCGguucccccGGGGGCGu -3'
miRNA:   3'- gGCUGU-GCCCa------CUGCGCau------UCCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 152821 1.1 0.002443
Target:  5'- uCCGACACGGGUGACGCGUAAGGGGCGu -3'
miRNA:   3'- -GGCUGUGCCCACUGCGCAUUCCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 2508 0.72 0.54704
Target:  5'- aCGGCGgGGG-GACggGCGgagcgGAGGGGCGc -3'
miRNA:   3'- gGCUGUgCCCaCUG--CGCa----UUCCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 151666 0.7 0.684588
Target:  5'- gCGGCAgGgGGUGAUgGUGUgaaaGAGGGGCa -3'
miRNA:   3'- gGCUGUgC-CCACUG-CGCA----UUCCCCGc -5'
4184 3' -57.8 NC_001664.1 + 585 0.7 0.684588
Target:  5'- gCGGCAgGgGGUGAUgGUGUgaaaGAGGGGCa -3'
miRNA:   3'- gGCUGUgC-CCACUG-CGCA----UUCCCCGc -5'
4184 3' -57.8 NC_001664.1 + 153532 0.7 0.694351
Target:  5'- aCGACggGCGGGgcgGACGgggacgacaCGUGGGGGGUu -3'
miRNA:   3'- gGCUG--UGCCCa--CUGC---------GCAUUCCCCGc -5'
4184 3' -57.8 NC_001664.1 + 2451 0.7 0.694351
Target:  5'- aCGACggGCGGGgcgGACGgggacgacaCGUGGGGGGUu -3'
miRNA:   3'- gGCUG--UGCCCa--CUGC---------GCAUUCCCCGc -5'
4184 3' -57.8 NC_001664.1 + 155218 0.67 0.838365
Target:  5'- aCGAgG-GGGUGcguccuauaggcGCGCGUggGAGGGGCc -3'
miRNA:   3'- gGCUgUgCCCAC------------UGCGCA--UUCCCCGc -5'
4184 3' -57.8 NC_001664.1 + 4136 0.67 0.838365
Target:  5'- aCGAgG-GGGUGcguccuauaggcGCGCGUggGAGGGGCc -3'
miRNA:   3'- gGCUgUgCCCAC------------UGCGCA--UUCCCCGc -5'
4184 3' -57.8 NC_001664.1 + 151191 0.66 0.895619
Target:  5'- cCUGGCGCGGucUGAccuCGCGccgcGGGGCGa -3'
miRNA:   3'- -GGCUGUGCCc-ACU---GCGCauu-CCCCGC- -5'
4184 3' -57.8 NC_001664.1 + 153589 0.72 0.54704
Target:  5'- aCGGCGgGGG-GACggGCGgagcgGAGGGGCGc -3'
miRNA:   3'- gGCUGUgCCCaCUG--CGCa----UUCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.