miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4184 5' -56.5 NC_001664.1 + 153246 0.67 0.841774
Target:  5'- aCCuggCUCUCCuGUgcgugcucgugGCGCCCgGAGUCg -3'
miRNA:   3'- aGGua-GAGAGG-CG-----------UGCGGGgCUUAGa -5'
4184 5' -56.5 NC_001664.1 + 2164 0.67 0.841774
Target:  5'- aCCuggCUCUCCuGUgcgugcucgugGCGCCCgGAGUCg -3'
miRNA:   3'- aGGua-GAGAGG-CG-----------UGCGGGgCUUAGa -5'
4184 5' -56.5 NC_001664.1 + 154811 0.67 0.872417
Target:  5'- cUCAUCcuUCUCCGUACGUCCCcuuUCc -3'
miRNA:   3'- aGGUAG--AGAGGCGUGCGGGGcuuAGa -5'
4184 5' -56.5 NC_001664.1 + 3730 0.67 0.872417
Target:  5'- cUCAUCcuUCUCCGUACGUCCCcuuUCc -3'
miRNA:   3'- aGGUAG--AGAGGCGUGCGGGGcuuAGa -5'
4184 5' -56.5 NC_001664.1 + 152546 0.68 0.808139
Target:  5'- cUCCAcaUCUCCGCACGUCUgGcuGAUCc -3'
miRNA:   3'- -AGGUagAGAGGCGUGCGGGgC--UUAGa -5'
4184 5' -56.5 NC_001664.1 + 1464 0.68 0.808139
Target:  5'- cUCCAcaUCUCCGCACGUCUgGcuGAUCc -3'
miRNA:   3'- -AGGUagAGAGGCGUGCGGGgC--UUAGa -5'
4184 5' -56.5 NC_001664.1 + 152050 0.69 0.771994
Target:  5'- aUCCGUCUCUCaGCugGCUgacaGGAUCg -3'
miRNA:   3'- -AGGUAGAGAGgCGugCGGgg--CUUAGa -5'
4184 5' -56.5 NC_001664.1 + 969 0.69 0.771994
Target:  5'- aUCCGUCUCUCaGCugGCUgacaGGAUCg -3'
miRNA:   3'- -AGGUAGAGAGgCGugCGGgg--CUUAGa -5'
4184 5' -56.5 NC_001664.1 + 152864 1.09 0.002962
Target:  5'- gUCCAUCUCUCCGCACGCCCCGAAUCUg -3'
miRNA:   3'- -AGGUAGAGAGGCGUGCGGGGCUUAGA- -5'
4184 5' -56.5 NC_001664.1 + 1783 1.09 0.002962
Target:  5'- gUCCAUCUCUCCGCACGCCCCGAAUCUg -3'
miRNA:   3'- -AGGUAGAGAGGCGUGCGGGGCUUAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.