miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4185 3' -59.4 NC_001664.1 + 2919 1.09 0.001145
Target:  5'- cAGCAGCAGAGUCCGGCGCACGCACACg -3'
miRNA:   3'- -UCGUCGUCUCAGGCCGCGUGCGUGUG- -5'
4185 3' -59.4 NC_001664.1 + 154000 1.09 0.001145
Target:  5'- cAGCAGCAGAGUCCGGCGCACGCACACg -3'
miRNA:   3'- -UCGUCGUCUCAGGCCGCGUGCGUGUG- -5'
4185 3' -59.4 NC_001664.1 + 6229 0.7 0.50787
Target:  5'- uGGaCGGCGGu-UCCGGC-CGCGCGCAUg -3'
miRNA:   3'- -UC-GUCGUCucAGGCCGcGUGCGUGUG- -5'
4185 3' -59.4 NC_001664.1 + 157311 0.7 0.50787
Target:  5'- uGGaCGGCGGu-UCCGGC-CGCGCGCAUg -3'
miRNA:   3'- -UC-GUCGUCucAGGCCGcGUGCGUGUG- -5'
4185 3' -59.4 NC_001664.1 + 6365 0.68 0.636985
Target:  5'- aAGUuGCAGGacacUCCGGCGUGCGUcugACACa -3'
miRNA:   3'- -UCGuCGUCUc---AGGCCGCGUGCG---UGUG- -5'
4185 3' -59.4 NC_001664.1 + 157446 0.68 0.636985
Target:  5'- aAGUuGCAGGacacUCCGGCGUGCGUcugACACa -3'
miRNA:   3'- -UCGuCGUCUc---AGGCCGCGUGCG---UGUG- -5'
4185 3' -59.4 NC_001664.1 + 6162 0.73 0.364346
Target:  5'- cAGuCGGCAGAGUCUugccgcccucauguGGUGgACGUACACg -3'
miRNA:   3'- -UC-GUCGUCUCAGG--------------CCGCgUGCGUGUG- -5'
4185 3' -59.4 NC_001664.1 + 157244 0.73 0.364346
Target:  5'- cAGuCGGCAGAGUCUugccgcccucauguGGUGgACGUACACg -3'
miRNA:   3'- -UC-GUCGUCUCAGG--------------CCGCgUGCGUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.