miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4185 5' -53.1 NC_001664.1 + 922 0.67 0.960206
Target:  5'- cACGCGCGugucggcuACGACACGCUGGAgCAgcuuccacgCGAc -3'
miRNA:   3'- -UGCGUGC--------UGUUGUGCGGUCU-GUa--------GCU- -5'
4185 5' -53.1 NC_001664.1 + 1702 0.71 0.805725
Target:  5'- -aGCGCGACGGC-CGC--GACGUCGAc -3'
miRNA:   3'- ugCGUGCUGUUGuGCGguCUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 2072 0.66 0.977801
Target:  5'- gACGUACGGCGGCAgagGCC-GACAugauuccugcccgUCGAu -3'
miRNA:   3'- -UGCGUGCUGUUGUg--CGGuCUGU-------------AGCU- -5'
4185 5' -53.1 NC_001664.1 + 2821 0.66 0.972646
Target:  5'- uCGCGCGGCGucuCACGCCGugugugcGGCGggCGGc -3'
miRNA:   3'- uGCGUGCUGUu--GUGCGGU-------CUGUa-GCU- -5'
4185 5' -53.1 NC_001664.1 + 2954 1.09 0.006312
Target:  5'- cACGCACGACAACACGCCAGACAUCGAc -3'
miRNA:   3'- -UGCGUGCUGUUGUGCGGUCUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 3744 0.67 0.959843
Target:  5'- uCGUACGGCGAUgaucucgGCGCCGGugGUa-- -3'
miRNA:   3'- uGCGUGCUGUUG-------UGCGGUCugUAgcu -5'
4185 5' -53.1 NC_001664.1 + 4116 0.7 0.848416
Target:  5'- gGCGCGCGugGGagGgGCCGGACGUauaCGAa -3'
miRNA:   3'- -UGCGUGCugUUg-UgCGGUCUGUA---GCU- -5'
4185 5' -53.1 NC_001664.1 + 4295 0.7 0.886087
Target:  5'- gACaCGCGACAcAUugGCCcguuGACAUCGGg -3'
miRNA:   3'- -UGcGUGCUGU-UGugCGGu---CUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 4956 0.68 0.931194
Target:  5'- uCGCGCGugGGCcagucucgccucguuGCGCCGGAC--CGAg -3'
miRNA:   3'- uGCGUGCugUUG---------------UGCGGUCUGuaGCU- -5'
4185 5' -53.1 NC_001664.1 + 6300 0.67 0.963711
Target:  5'- gGCGgcCGCGGCGAuCACGUcgaaCAGAUGUCGGg -3'
miRNA:   3'- -UGC--GUGCUGUU-GUGCG----GUCUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 8114 0.68 0.93919
Target:  5'- cGCGCGCGGaaGACACGCguGuCGUgGAu -3'
miRNA:   3'- -UGCGUGCUg-UUGUGCGguCuGUAgCU- -5'
4185 5' -53.1 NC_001664.1 + 8377 0.68 0.94387
Target:  5'- gACGCGCGuagaGACGCcccGCCGGGCgGUUGAc -3'
miRNA:   3'- -UGCGUGCug--UUGUG---CGGUCUG-UAGCU- -5'
4185 5' -53.1 NC_001664.1 + 8462 0.68 0.93919
Target:  5'- cGCGCGCGAacguacacaGACACGCC-GACG-CGc -3'
miRNA:   3'- -UGCGUGCUg--------UUGUGCGGuCUGUaGCu -5'
4185 5' -53.1 NC_001664.1 + 10607 0.66 0.975578
Target:  5'- -gGC-CGACGACG-GCCAGAUuuUCGGa -3'
miRNA:   3'- ugCGuGCUGUUGUgCGGUCUGu-AGCU- -5'
4185 5' -53.1 NC_001664.1 + 10705 0.66 0.978038
Target:  5'- cAUGUGCGACGAgGCGCggcgCAGGCucgCGGa -3'
miRNA:   3'- -UGCGUGCUGUUgUGCG----GUCUGua-GCU- -5'
4185 5' -53.1 NC_001664.1 + 11792 0.67 0.960206
Target:  5'- uGCGCgGCGGCGGCuCGUuuGACAUCa- -3'
miRNA:   3'- -UGCG-UGCUGUUGuGCGguCUGUAGcu -5'
4185 5' -53.1 NC_001664.1 + 16020 0.7 0.848416
Target:  5'- cAUGCACGAuugauaaguuucCGACAUGCCcaACGUCGAc -3'
miRNA:   3'- -UGCGUGCU------------GUUGUGCGGucUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 33817 0.67 0.966995
Target:  5'- uCGCugGACuuaguGgACGCUAGugAUCa- -3'
miRNA:   3'- uGCGugCUGu----UgUGCGGUCugUAGcu -5'
4185 5' -53.1 NC_001664.1 + 45694 0.7 0.886087
Target:  5'- uGCuCGCGAUAGCACGCC-GAUcgUGAu -3'
miRNA:   3'- -UGcGUGCUGUUGUGCGGuCUGuaGCU- -5'
4185 5' -53.1 NC_001664.1 + 86357 0.74 0.668456
Target:  5'- -aGCACGguuGCAAacuuaACGCCAGACAUCa- -3'
miRNA:   3'- ugCGUGC---UGUUg----UGCGGUCUGUAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.