miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4186 3' -53.8 NC_001664.1 + 3118 1.1 0.004666
Target:  5'- cCAGUCCGUAAAAUCACCCGAGGGGCGg -3'
miRNA:   3'- -GUCAGGCAUUUUAGUGGGCUCCCCGC- -5'
4186 3' -53.8 NC_001664.1 + 3519 0.72 0.747352
Target:  5'- gUAGUCgUGgcGGAgCACCCGGGGaGGCGa -3'
miRNA:   3'- -GUCAG-GCauUUUaGUGGGCUCC-CCGC- -5'
4186 3' -53.8 NC_001664.1 + 4325 0.69 0.883903
Target:  5'- gGGUCCGcAGAcgCGguuccCCCG-GGGGCGu -3'
miRNA:   3'- gUCAGGCaUUUuaGU-----GGGCuCCCCGC- -5'
4186 3' -53.8 NC_001664.1 + 8582 0.67 0.946606
Target:  5'- -uGUCUGcgGAAAggucaacCGCCCGGcGGGGCGu -3'
miRNA:   3'- guCAGGCa-UUUUa------GUGGGCU-CCCCGC- -5'
4186 3' -53.8 NC_001664.1 + 8896 0.66 0.971689
Target:  5'- uGGUCCac-AGAUguCCCGGGGGGa- -3'
miRNA:   3'- gUCAGGcauUUUAguGGGCUCCCCgc -5'
4186 3' -53.8 NC_001664.1 + 151185 0.67 0.954898
Target:  5'- gCGGUCUGacc--UCGCgCCGcGGGGCGa -3'
miRNA:   3'- -GUCAGGCauuuuAGUG-GGCuCCCCGC- -5'
4186 3' -53.8 NC_001664.1 + 154200 1.1 0.004666
Target:  5'- cCAGUCCGUAAAAUCACCCGAGGGGCGg -3'
miRNA:   3'- -GUCAGGCAUUUUAGUGGGCUCCCCGC- -5'
4186 3' -53.8 NC_001664.1 + 154601 0.72 0.747352
Target:  5'- gUAGUCgUGgcGGAgCACCCGGGGaGGCGa -3'
miRNA:   3'- -GUCAG-GCauUUUaGUGGGCUCC-CCGC- -5'
4186 3' -53.8 NC_001664.1 + 155407 0.69 0.883903
Target:  5'- gGGUCCGcAGAcgCGguuccCCCG-GGGGCGu -3'
miRNA:   3'- gUCAGGCaUUUuaGU-----GGGCuCCCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.