Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4186 | 3' | -53.8 | NC_001664.1 | + | 3118 | 1.1 | 0.004666 |
Target: 5'- cCAGUCCGUAAAAUCACCCGAGGGGCGg -3' miRNA: 3'- -GUCAGGCAUUUUAGUGGGCUCCCCGC- -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 3519 | 0.72 | 0.747352 |
Target: 5'- gUAGUCgUGgcGGAgCACCCGGGGaGGCGa -3' miRNA: 3'- -GUCAG-GCauUUUaGUGGGCUCC-CCGC- -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 4325 | 0.69 | 0.883903 |
Target: 5'- gGGUCCGcAGAcgCGguuccCCCG-GGGGCGu -3' miRNA: 3'- gUCAGGCaUUUuaGU-----GGGCuCCCCGC- -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 8582 | 0.67 | 0.946606 |
Target: 5'- -uGUCUGcgGAAAggucaacCGCCCGGcGGGGCGu -3' miRNA: 3'- guCAGGCa-UUUUa------GUGGGCU-CCCCGC- -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 8896 | 0.66 | 0.971689 |
Target: 5'- uGGUCCac-AGAUguCCCGGGGGGa- -3' miRNA: 3'- gUCAGGcauUUUAguGGGCUCCCCgc -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 151185 | 0.67 | 0.954898 |
Target: 5'- gCGGUCUGacc--UCGCgCCGcGGGGCGa -3' miRNA: 3'- -GUCAGGCauuuuAGUG-GGCuCCCCGC- -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 154200 | 1.1 | 0.004666 |
Target: 5'- cCAGUCCGUAAAAUCACCCGAGGGGCGg -3' miRNA: 3'- -GUCAGGCAUUUUAGUGGGCUCCCCGC- -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 154601 | 0.72 | 0.747352 |
Target: 5'- gUAGUCgUGgcGGAgCACCCGGGGaGGCGa -3' miRNA: 3'- -GUCAG-GCauUUUaGUGGGCUCC-CCGC- -5' |
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4186 | 3' | -53.8 | NC_001664.1 | + | 155407 | 0.69 | 0.883903 |
Target: 5'- gGGUCCGcAGAcgCGguuccCCCG-GGGGCGu -3' miRNA: 3'- gUCAGGCaUUUuaGU-----GGGCuCCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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