miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4186 5' -66.1 NC_001664.1 + 153143 0.67 0.457362
Target:  5'- gCGCGCCgucaucgcgguguCCUCGUCCGcuaCCGCCgCGc -3'
miRNA:   3'- -GCGCGG-------------GGAGCGGGCua-GGCGGgGCu -5'
4186 5' -66.1 NC_001664.1 + 2061 0.67 0.457362
Target:  5'- gCGCGCCgucaucgcgguguCCUCGUCCGcuaCCGCCgCGc -3'
miRNA:   3'- -GCGCGG-------------GGAGCGGGCua-GGCGGgGCu -5'
4186 5' -66.1 NC_001664.1 + 153327 0.68 0.385117
Target:  5'- cCGCGgaggaaccCCCCacgugUCGuCCCcGUCCGCCCCGc -3'
miRNA:   3'- -GCGC--------GGGG-----AGC-GGGcUAGGCGGGGCu -5'
4186 5' -66.1 NC_001664.1 + 2245 0.68 0.385117
Target:  5'- cCGCGgaggaaccCCCCacgugUCGuCCCcGUCCGCCCCGc -3'
miRNA:   3'- -GCGC--------GGGG-----AGC-GGGcUAGGCGGGGCu -5'
4186 5' -66.1 NC_001664.1 + 8388 0.72 0.227738
Target:  5'- uCGCGCucaCCCUCGCCUuuaaacuacgcgccGUCCGCCCCu- -3'
miRNA:   3'- -GCGCG---GGGAGCGGGc-------------UAGGCGGGGcu -5'
4186 5' -66.1 NC_001664.1 + 153619 0.74 0.171307
Target:  5'- gGCG-CCCUCGUCCGcgCCGgCCCGu -3'
miRNA:   3'- gCGCgGGGAGCGGGCuaGGCgGGGCu -5'
4186 5' -66.1 NC_001664.1 + 2537 0.74 0.171307
Target:  5'- gGCG-CCCUCGUCCGcgCCGgCCCGu -3'
miRNA:   3'- gCGCgGGGAGCGGGCuaGGCgGGGCu -5'
4186 5' -66.1 NC_001664.1 + 153398 0.76 0.119966
Target:  5'- uCGCGCCCCUccgcucCGCCCG-UCC-CCCCGc -3'
miRNA:   3'- -GCGCGGGGA------GCGGGCuAGGcGGGGCu -5'
4186 5' -66.1 NC_001664.1 + 2316 0.76 0.119966
Target:  5'- uCGCGCCCCUccgcucCGCCCG-UCC-CCCCGc -3'
miRNA:   3'- -GCGCGGGGA------GCGGGCuAGGcGGGGCu -5'
4186 5' -66.1 NC_001664.1 + 154235 1.08 0.000594
Target:  5'- cCGCGCCCCUCGCCCGAUCCGCCCCGAu -3'
miRNA:   3'- -GCGCGGGGAGCGGGCUAGGCGGGGCU- -5'
4186 5' -66.1 NC_001664.1 + 3153 1.08 0.000594
Target:  5'- cCGCGCCCCUCGCCCGAUCCGCCCCGAu -3'
miRNA:   3'- -GCGCGGGGAGCGGGCUAGGCGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.