Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4187 | 3' | -60.5 | NC_001664.1 | + | 155895 | 0.66 | 0.763204 |
Target: 5'- gACugGCUG-CUCCugGcCCGCGGcAGGCc -3' miRNA: 3'- -UGugCGGCuGAGG--CaGGCGUC-UCCGc -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 4814 | 0.66 | 0.763204 |
Target: 5'- gACugGCUG-CUCCugGcCCGCGGcAGGCc -3' miRNA: 3'- -UGugCGGCuGAGG--CaGGCGUC-UCCGc -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 157398 | 0.66 | 0.744746 |
Target: 5'- aGCAgGuuGugUUCGUCgGCGGccgcGGCGa -3' miRNA: 3'- -UGUgCggCugAGGCAGgCGUCu---CCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 6317 | 0.66 | 0.744746 |
Target: 5'- aGCAgGuuGugUUCGUCgGCGGccgcGGCGa -3' miRNA: 3'- -UGUgCggCugAGGCAGgCGUCu---CCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 154194 | 0.67 | 0.706801 |
Target: 5'- cACACGCC-AgUCCGUaaaaucacCCG-AGGGGCGg -3' miRNA: 3'- -UGUGCGGcUgAGGCA--------GGCgUCUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 3112 | 0.67 | 0.706801 |
Target: 5'- cACACGCC-AgUCCGUaaaaucacCCG-AGGGGCGg -3' miRNA: 3'- -UGUGCGGcUgAGGCA--------GGCgUCUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 154178 | 0.67 | 0.658114 |
Target: 5'- -uGCGCCgGACUCUG-CUGCuggguguguauGGGGGCGa -3' miRNA: 3'- ugUGCGG-CUGAGGCaGGCG-----------UCUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 3096 | 0.67 | 0.658114 |
Target: 5'- -uGCGCCgGACUCUG-CUGCuggguguguauGGGGGCGa -3' miRNA: 3'- ugUGCGG-CUGAGGCaGGCG-----------UCUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 37659 | 0.68 | 0.628607 |
Target: 5'- -aACGCCGA-UCUGUCCG-AGGGGgGa -3' miRNA: 3'- ugUGCGGCUgAGGCAGGCgUCUCCgC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 35764 | 0.68 | 0.608937 |
Target: 5'- -gACGCCGcCgCCGUCCuauuCAGAGGUGc -3' miRNA: 3'- ugUGCGGCuGaGGCAGGc---GUCUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 154045 | 0.68 | 0.608937 |
Target: 5'- aACACGCCaGACaUCGaCCGCcGGAGGUa -3' miRNA: 3'- -UGUGCGG-CUGaGGCaGGCG-UCUCCGc -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 2964 | 0.68 | 0.608937 |
Target: 5'- aACACGCCaGACaUCGaCCGCcGGAGGUa -3' miRNA: 3'- -UGUGCGG-CUGaGGCaGGCG-UCUCCGc -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 152805 | 0.7 | 0.521913 |
Target: 5'- cGCGCGgaCCGAC-CCGUCCGaCAcGGGUGa -3' miRNA: 3'- -UGUGC--GGCUGaGGCAGGC-GUcUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 1724 | 0.7 | 0.521913 |
Target: 5'- cGCGCGgaCCGAC-CCGUCCGaCAcGGGUGa -3' miRNA: 3'- -UGUGC--GGCUGaGGCAGGC-GUcUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 154488 | 1.08 | 0.001408 |
Target: 5'- cACACGCCGACUCCGUCCGCAGAGGCGg -3' miRNA: 3'- -UGUGCGGCUGAGGCAGGCGUCUCCGC- -5' |
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4187 | 3' | -60.5 | NC_001664.1 | + | 3406 | 1.08 | 0.001408 |
Target: 5'- cACACGCCGACUCCGUCCGCAGAGGCGg -3' miRNA: 3'- -UGUGCGGCUGAGGCAGGCGUCUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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