miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4187 3' -60.5 NC_001664.1 + 4814 0.66 0.763204
Target:  5'- gACugGCUG-CUCCugGcCCGCGGcAGGCc -3'
miRNA:   3'- -UGugCGGCuGAGG--CaGGCGUC-UCCGc -5'
4187 3' -60.5 NC_001664.1 + 155895 0.66 0.763204
Target:  5'- gACugGCUG-CUCCugGcCCGCGGcAGGCc -3'
miRNA:   3'- -UGugCGGCuGAGG--CaGGCGUC-UCCGc -5'
4187 3' -60.5 NC_001664.1 + 6317 0.66 0.744746
Target:  5'- aGCAgGuuGugUUCGUCgGCGGccgcGGCGa -3'
miRNA:   3'- -UGUgCggCugAGGCAGgCGUCu---CCGC- -5'
4187 3' -60.5 NC_001664.1 + 157398 0.66 0.744746
Target:  5'- aGCAgGuuGugUUCGUCgGCGGccgcGGCGa -3'
miRNA:   3'- -UGUgCggCugAGGCAGgCGUCu---CCGC- -5'
4187 3' -60.5 NC_001664.1 + 3112 0.67 0.706801
Target:  5'- cACACGCC-AgUCCGUaaaaucacCCG-AGGGGCGg -3'
miRNA:   3'- -UGUGCGGcUgAGGCA--------GGCgUCUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 154194 0.67 0.706801
Target:  5'- cACACGCC-AgUCCGUaaaaucacCCG-AGGGGCGg -3'
miRNA:   3'- -UGUGCGGcUgAGGCA--------GGCgUCUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 3096 0.67 0.658114
Target:  5'- -uGCGCCgGACUCUG-CUGCuggguguguauGGGGGCGa -3'
miRNA:   3'- ugUGCGG-CUGAGGCaGGCG-----------UCUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 154178 0.67 0.658114
Target:  5'- -uGCGCCgGACUCUG-CUGCuggguguguauGGGGGCGa -3'
miRNA:   3'- ugUGCGG-CUGAGGCaGGCG-----------UCUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 37659 0.68 0.628607
Target:  5'- -aACGCCGA-UCUGUCCG-AGGGGgGa -3'
miRNA:   3'- ugUGCGGCUgAGGCAGGCgUCUCCgC- -5'
4187 3' -60.5 NC_001664.1 + 2964 0.68 0.608937
Target:  5'- aACACGCCaGACaUCGaCCGCcGGAGGUa -3'
miRNA:   3'- -UGUGCGG-CUGaGGCaGGCG-UCUCCGc -5'
4187 3' -60.5 NC_001664.1 + 154045 0.68 0.608937
Target:  5'- aACACGCCaGACaUCGaCCGCcGGAGGUa -3'
miRNA:   3'- -UGUGCGG-CUGaGGCaGGCG-UCUCCGc -5'
4187 3' -60.5 NC_001664.1 + 35764 0.68 0.608937
Target:  5'- -gACGCCGcCgCCGUCCuauuCAGAGGUGc -3'
miRNA:   3'- ugUGCGGCuGaGGCAGGc---GUCUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 1724 0.7 0.521913
Target:  5'- cGCGCGgaCCGAC-CCGUCCGaCAcGGGUGa -3'
miRNA:   3'- -UGUGC--GGCUGaGGCAGGC-GUcUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 152805 0.7 0.521913
Target:  5'- cGCGCGgaCCGAC-CCGUCCGaCAcGGGUGa -3'
miRNA:   3'- -UGUGC--GGCUGaGGCAGGC-GUcUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 3406 1.08 0.001408
Target:  5'- cACACGCCGACUCCGUCCGCAGAGGCGg -3'
miRNA:   3'- -UGUGCGGCUGAGGCAGGCGUCUCCGC- -5'
4187 3' -60.5 NC_001664.1 + 154488 1.08 0.001408
Target:  5'- cACACGCCGACUCCGUCCGCAGAGGCGg -3'
miRNA:   3'- -UGUGCGGCUGAGGCAGGCGUCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.