miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4188 3' -55.6 NC_001664.1 + 6571 0.66 0.922472
Target:  5'- gCCAUGAGaGGACACugGacguacucggccCCgGGUAGAc -3'
miRNA:   3'- aGGUACUUgCCUGUGugC------------GG-CCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 143411 0.66 0.916854
Target:  5'- gCgAUGAAUGGAUAuuCACuacauCCGGCGGAg -3'
miRNA:   3'- aGgUACUUGCCUGU--GUGc----GGCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 1347 0.67 0.904908
Target:  5'- gUCCcgGcACGucCACAgGCuCGGCAGGg -3'
miRNA:   3'- -AGGuaCuUGCcuGUGUgCG-GCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 152428 0.67 0.904908
Target:  5'- gUCCcgGcACGucCACAgGCuCGGCAGGg -3'
miRNA:   3'- -AGGuaCuUGCcuGUGUgCG-GCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 145194 0.67 0.898585
Target:  5'- -gUAUGAACGG-UAgACGCCGGaGGAc -3'
miRNA:   3'- agGUACUUGCCuGUgUGCGGCCgUCU- -5'
4188 3' -55.6 NC_001664.1 + 3396 0.67 0.885252
Target:  5'- cCCcgGAGC--ACACACGCCGacuccguccGCAGAg -3'
miRNA:   3'- aGGuaCUUGccUGUGUGCGGC---------CGUCU- -5'
4188 3' -55.6 NC_001664.1 + 154478 0.67 0.885252
Target:  5'- cCCcgGAGC--ACACACGCCGacuccguccGCAGAg -3'
miRNA:   3'- aGGuaCUUGccUGUGUGCGGC---------CGUCU- -5'
4188 3' -55.6 NC_001664.1 + 13594 0.69 0.823441
Target:  5'- uUCCAUGAACGGAguCucauCGUaaucuuuguaGGCAGGa -3'
miRNA:   3'- -AGGUACUUGCCUguGu---GCGg---------CCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 2529 0.69 0.823441
Target:  5'- ----aGaAACGGACACGCGCaguggaCGGCGGGg -3'
miRNA:   3'- agguaC-UUGCCUGUGUGCG------GCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 153610 0.69 0.823441
Target:  5'- ----aGaAACGGACACGCGCaguggaCGGCGGGg -3'
miRNA:   3'- agguaC-UUGCCUGUGUGCG------GCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 7773 0.7 0.740034
Target:  5'- aCCGUGGgucccagACGGugGCACGUCGcGCGcGAu -3'
miRNA:   3'- aGGUACU-------UGCCugUGUGCGGC-CGU-CU- -5'
4188 3' -55.6 NC_001664.1 + 158855 0.7 0.740034
Target:  5'- aCCGUGGgucccagACGGugGCACGUCGcGCGcGAu -3'
miRNA:   3'- aGGUACU-------UGCCugUGUGCGGC-CGU-CU- -5'
4188 3' -55.6 NC_001664.1 + 157653 0.73 0.589783
Target:  5'- gCCAUGAGaGGACACugGacguacucggccCCGGUAGAc -3'
miRNA:   3'- aGGUACUUgCCUGUGugC------------GGCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 153797 0.75 0.50052
Target:  5'- gCCGgc-GCGGACGaggGCGCCGGCGGGa -3'
miRNA:   3'- aGGUacuUGCCUGUg--UGCGGCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 2715 0.75 0.50052
Target:  5'- gCCGgc-GCGGACGaggGCGCCGGCGGGa -3'
miRNA:   3'- aGGUacuUGCCUGUg--UGCGGCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 154859 1.1 0.003015
Target:  5'- aUCCAUGAACGGACACACGCCGGCAGAa -3'
miRNA:   3'- -AGGUACUUGCCUGUGUGCGGCCGUCU- -5'
4188 3' -55.6 NC_001664.1 + 3778 1.1 0.003015
Target:  5'- aUCCAUGAACGGACACACGCCGGCAGAa -3'
miRNA:   3'- -AGGUACUUGCCUGUGUGCGGCCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.