miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
420 3' -61.3 AC_000011.1 + 18014 0.66 0.307986
Target:  5'- uGGCcaggGGCGCgaUGGGCCgCGUGGUGggCa -3'
miRNA:   3'- -CCGag--UCGCG--GCCCGG-GCGCUACuaG- -5'
420 3' -61.3 AC_000011.1 + 12440 0.66 0.307231
Target:  5'- cGCUC-GCGCUGGGCCacggccuCGCGcacgucGGUCa -3'
miRNA:   3'- cCGAGuCGCGGCCCGG-------GCGCua----CUAG- -5'
420 3' -61.3 AC_000011.1 + 8790 0.66 0.293156
Target:  5'- cGGC-CGGCGCgcuccaCGGuGgCCGCGA-GGUCg -3'
miRNA:   3'- -CCGaGUCGCG------GCC-CgGGCGCUaCUAG- -5'
420 3' -61.3 AC_000011.1 + 21180 0.66 0.285953
Target:  5'- aGCUCcugcuCGCCGGaGCCCGCGGccaUGGc- -3'
miRNA:   3'- cCGAGuc---GCGGCC-CGGGCGCU---ACUag -5'
420 3' -61.3 AC_000011.1 + 12101 0.67 0.252025
Target:  5'- uGGCUCugcAGCGCCGcccGCaUCGCGG-GAUCa -3'
miRNA:   3'- -CCGAG---UCGCGGCc--CG-GGCGCUaCUAG- -5'
420 3' -61.3 AC_000011.1 + 10181 0.68 0.233303
Target:  5'- uGGCgggGGCGCCGGGC--GCGA-GGUCc -3'
miRNA:   3'- -CCGag-UCGCGGCCCGggCGCUaCUAG- -5'
420 3' -61.3 AC_000011.1 + 23948 0.68 0.227327
Target:  5'- uGGC-CAGgGCCucGGGCaCCGCGAaGAc- -3'
miRNA:   3'- -CCGaGUCgCGG--CCCG-GGCGCUaCUag -5'
420 3' -61.3 AC_000011.1 + 26835 0.69 0.194148
Target:  5'- aGCUCuuCGCUGGGUCUGCGAccUGAc- -3'
miRNA:   3'- cCGAGucGCGGCCCGGGCGCU--ACUag -5'
420 3' -61.3 AC_000011.1 + 17837 0.7 0.165286
Target:  5'- cGGCgggCGGCaCCGGGUCCagGCGGcuguUGAUCu -3'
miRNA:   3'- -CCGa--GUCGcGGCCCGGG--CGCU----ACUAG- -5'
420 3' -61.3 AC_000011.1 + 24255 0.7 0.160867
Target:  5'- aGGUUCAGaGCCGGGUagGCGAaaugGGUCa -3'
miRNA:   3'- -CCGAGUCgCGGCCCGggCGCUa---CUAG- -5'
420 3' -61.3 AC_000011.1 + 24512 0.7 0.156555
Target:  5'- gGGUUCGuGCGCCaGGCCUGCaa-GAUCu -3'
miRNA:   3'- -CCGAGU-CGCGGcCCGGGCGcuaCUAG- -5'
420 3' -61.3 AC_000011.1 + 26511 1.1 0.000119
Target:  5'- uGGCUCAGCGCCGGGCCCGCGAUGAUCu -3'
miRNA:   3'- -CCGAGUCGCGGCCCGGGCGCUACUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.