Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
420 | 3' | -61.3 | AC_000011.1 | + | 18014 | 0.66 | 0.307986 |
Target: 5'- uGGCcaggGGCGCgaUGGGCCgCGUGGUGggCa -3' miRNA: 3'- -CCGag--UCGCG--GCCCGG-GCGCUACuaG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 12440 | 0.66 | 0.307231 |
Target: 5'- cGCUC-GCGCUGGGCCacggccuCGCGcacgucGGUCa -3' miRNA: 3'- cCGAGuCGCGGCCCGG-------GCGCua----CUAG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 8790 | 0.66 | 0.293156 |
Target: 5'- cGGC-CGGCGCgcuccaCGGuGgCCGCGA-GGUCg -3' miRNA: 3'- -CCGaGUCGCG------GCC-CgGGCGCUaCUAG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 21180 | 0.66 | 0.285953 |
Target: 5'- aGCUCcugcuCGCCGGaGCCCGCGGccaUGGc- -3' miRNA: 3'- cCGAGuc---GCGGCC-CGGGCGCU---ACUag -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 12101 | 0.67 | 0.252025 |
Target: 5'- uGGCUCugcAGCGCCGcccGCaUCGCGG-GAUCa -3' miRNA: 3'- -CCGAG---UCGCGGCc--CG-GGCGCUaCUAG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 10181 | 0.68 | 0.233303 |
Target: 5'- uGGCgggGGCGCCGGGC--GCGA-GGUCc -3' miRNA: 3'- -CCGag-UCGCGGCCCGggCGCUaCUAG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 23948 | 0.68 | 0.227327 |
Target: 5'- uGGC-CAGgGCCucGGGCaCCGCGAaGAc- -3' miRNA: 3'- -CCGaGUCgCGG--CCCG-GGCGCUaCUag -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 26835 | 0.69 | 0.194148 |
Target: 5'- aGCUCuuCGCUGGGUCUGCGAccUGAc- -3' miRNA: 3'- cCGAGucGCGGCCCGGGCGCU--ACUag -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 17837 | 0.7 | 0.165286 |
Target: 5'- cGGCgggCGGCaCCGGGUCCagGCGGcuguUGAUCu -3' miRNA: 3'- -CCGa--GUCGcGGCCCGGG--CGCU----ACUAG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 24255 | 0.7 | 0.160867 |
Target: 5'- aGGUUCAGaGCCGGGUagGCGAaaugGGUCa -3' miRNA: 3'- -CCGAGUCgCGGCCCGggCGCUa---CUAG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 24512 | 0.7 | 0.156555 |
Target: 5'- gGGUUCGuGCGCCaGGCCUGCaa-GAUCu -3' miRNA: 3'- -CCGAGU-CGCGGcCCGGGCGcuaCUAG- -5' |
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420 | 3' | -61.3 | AC_000011.1 | + | 26511 | 1.1 | 0.000119 |
Target: 5'- uGGCUCAGCGCCGGGCCCGCGAUGAUCu -3' miRNA: 3'- -CCGAGUCGCGGCCCGGGCGCUACUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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