miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
420 5' -56 AC_000011.1 + 22030 0.66 0.54495
Target:  5'- -aGAUcUCCGCGCCCgACCu--GCUGGg -3'
miRNA:   3'- uaCUGuAGGCGCGGG-UGGcuuUGGUC- -5'
420 5' -56 AC_000011.1 + 5294 0.66 0.54495
Target:  5'- ----gAUCgGCGCCCugCGcgucGGCCAGg -3'
miRNA:   3'- uacugUAGgCGCGGGugGCu---UUGGUC- -5'
420 5' -56 AC_000011.1 + 9379 0.66 0.533913
Target:  5'- gGUGACGg-CGCGCCCGuCCucgcGggGCCGc -3'
miRNA:   3'- -UACUGUagGCGCGGGU-GG----CuuUGGUc -5'
420 5' -56 AC_000011.1 + 6375 0.66 0.501314
Target:  5'- -aGGCGUCCGC-CCUugCGcGAgCAGa -3'
miRNA:   3'- uaCUGUAGGCGcGGGugGCuUUgGUC- -5'
420 5' -56 AC_000011.1 + 18598 0.67 0.490641
Target:  5'- uUGACAUCCGCGgCgUGCUG-GAUCGGg -3'
miRNA:   3'- uACUGUAGGCGC-GgGUGGCuUUGGUC- -5'
420 5' -56 AC_000011.1 + 11808 0.68 0.438982
Target:  5'- cUGAUgcauaGUCUGCagcggGCCCugACCGggGCCGGg -3'
miRNA:   3'- uACUG-----UAGGCG-----CGGG--UGGCuuUGGUC- -5'
420 5' -56 AC_000011.1 + 20874 0.68 0.438982
Target:  5'- cAUGucCAUgggCGCGCUCACCGAccucGGCCAGa -3'
miRNA:   3'- -UACu-GUAg--GCGCGGGUGGCU----UUGGUC- -5'
420 5' -56 AC_000011.1 + 4108 0.68 0.438982
Target:  5'- --aACAUCCaaGCCCACCucuACCGGg -3'
miRNA:   3'- uacUGUAGGcgCGGGUGGcuuUGGUC- -5'
420 5' -56 AC_000011.1 + 5468 0.68 0.429025
Target:  5'- -aGGCGUCCGCGCCgCAgUGG-GCgCAGa -3'
miRNA:   3'- uaCUGUAGGCGCGG-GUgGCUuUG-GUC- -5'
420 5' -56 AC_000011.1 + 15200 0.68 0.409518
Target:  5'- -gGGCAggagcUCgGCGCCCACC---ACCGGg -3'
miRNA:   3'- uaCUGU-----AGgCGCGGGUGGcuuUGGUC- -5'
420 5' -56 AC_000011.1 + 5613 0.68 0.390573
Target:  5'- gGUGACAaagaggcugUCCGUGUCC-CCGuAGACCGa -3'
miRNA:   3'- -UACUGU---------AGGCGCGGGuGGC-UUUGGUc -5'
420 5' -56 AC_000011.1 + 20724 0.69 0.372209
Target:  5'- -cGGCuaccUCGCGCCCACCaugcGCCAGg -3'
miRNA:   3'- uaCUGua--GGCGCGGGUGGcuu-UGGUC- -5'
420 5' -56 AC_000011.1 + 32079 0.7 0.320734
Target:  5'- uGUGGaggaaGUuuGCaGCCCGCCGggGCCu- -3'
miRNA:   3'- -UACUg----UAggCG-CGGGUGGCuuUGGuc -5'
420 5' -56 AC_000011.1 + 33984 0.7 0.297067
Target:  5'- -cGAgAUCCgcaugcgcugcuGCGCCCGCCGc-ACCAGa -3'
miRNA:   3'- uaCUgUAGG------------CGCGGGUGGCuuUGGUC- -5'
420 5' -56 AC_000011.1 + 10919 0.72 0.228
Target:  5'- -cGACcgCCGCGgCCGCCGuGAGCgGGg -3'
miRNA:   3'- uaCUGuaGGCGCgGGUGGC-UUUGgUC- -5'
420 5' -56 AC_000011.1 + 5536 0.73 0.204413
Target:  5'- -aGAcCGUCUGCGCCCACUGcgGCgCGGa -3'
miRNA:   3'- uaCU-GUAGGCGCGGGUGGCuuUG-GUC- -5'
420 5' -56 AC_000011.1 + 9433 0.75 0.15454
Target:  5'- -gGACGggCGCGCCguCACCGAGACCAu -3'
miRNA:   3'- uaCUGUagGCGCGG--GUGGCUUUGGUc -5'
420 5' -56 AC_000011.1 + 26547 1.07 0.000624
Target:  5'- aAUGACAUCCGCGCCCACCGAAACCAGa -3'
miRNA:   3'- -UACUGUAGGCGCGGGUGGCUUUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.