miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
421 3' -53.8 AC_000011.1 + 7101 0.66 0.693597
Target:  5'- gGCUCUuaccGUGcagAUCAGGAcgGGUUCCCCc -3'
miRNA:   3'- gCGGGAc---CACa--UGGUCCU--UUAAGGGG- -5'
421 3' -53.8 AC_000011.1 + 20613 0.66 0.689095
Target:  5'- aGCCCUGGUagccgauguuguaGUgggccagcaucuggACCAGGAAccagUCCUUg -3'
miRNA:   3'- gCGGGACCA-------------CA--------------UGGUCCUUua--AGGGG- -5'
421 3' -53.8 AC_000011.1 + 34483 0.66 0.664187
Target:  5'- uGCCCUGuucUGCgGGGuucgcuguccugcaaGAGUUCCCCg -3'
miRNA:   3'- gCGGGACcacAUGgUCC---------------UUUAAGGGG- -5'
421 3' -53.8 AC_000011.1 + 12519 0.67 0.614025
Target:  5'- gCGCCUgaUGGUG-ACCgAGGug---CCCCa -3'
miRNA:   3'- -GCGGG--ACCACaUGG-UCCuuuaaGGGG- -5'
421 3' -53.8 AC_000011.1 + 27534 0.68 0.568676
Target:  5'- --aCCUGGcUGUuCCAGGGc--UCCCCg -3'
miRNA:   3'- gcgGGACC-ACAuGGUCCUuuaAGGGG- -5'
421 3' -53.8 AC_000011.1 + 2106 0.68 0.568676
Target:  5'- uGCCCUGGgacucuCCuGGAGAUucaggaUCCUCa -3'
miRNA:   3'- gCGGGACCacau--GGuCCUUUA------AGGGG- -5'
421 3' -53.8 AC_000011.1 + 17793 0.7 0.449978
Target:  5'- aCGgCCUGGUugGCCAGGuccaccaCCCCg -3'
miRNA:   3'- -GCgGGACCAcaUGGUCCuuuaa--GGGG- -5'
421 3' -53.8 AC_000011.1 + 32395 0.7 0.449978
Target:  5'- gGCCUUGGUG-GCCGuguuGGAGAUgaguuUUCCCg -3'
miRNA:   3'- gCGGGACCACaUGGU----CCUUUA-----AGGGG- -5'
421 3' -53.8 AC_000011.1 + 12863 0.71 0.400651
Target:  5'- gCGCCCUGG---GCCAGGAcga--CCCg -3'
miRNA:   3'- -GCGGGACCacaUGGUCCUuuaagGGG- -5'
421 3' -53.8 AC_000011.1 + 9427 0.71 0.372758
Target:  5'- gCGCaucuCCaGGUG-GCCGGGGGggUCCCCg -3'
miRNA:   3'- -GCG----GGaCCACaUGGUCCUUuaAGGGG- -5'
421 3' -53.8 AC_000011.1 + 26641 1.13 0.000434
Target:  5'- cCGCCCUGGUGUACCAGGAAAUUCCCCa -3'
miRNA:   3'- -GCGGGACCACAUGGUCCUUUAAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.