Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
421 | 3' | -53.8 | AC_000011.1 | + | 7101 | 0.66 | 0.693597 |
Target: 5'- gGCUCUuaccGUGcagAUCAGGAcgGGUUCCCCc -3' miRNA: 3'- gCGGGAc---CACa--UGGUCCU--UUAAGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 20613 | 0.66 | 0.689095 |
Target: 5'- aGCCCUGGUagccgauguuguaGUgggccagcaucuggACCAGGAAccagUCCUUg -3' miRNA: 3'- gCGGGACCA-------------CA--------------UGGUCCUUua--AGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 34483 | 0.66 | 0.664187 |
Target: 5'- uGCCCUGuucUGCgGGGuucgcuguccugcaaGAGUUCCCCg -3' miRNA: 3'- gCGGGACcacAUGgUCC---------------UUUAAGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 12519 | 0.67 | 0.614025 |
Target: 5'- gCGCCUgaUGGUG-ACCgAGGug---CCCCa -3' miRNA: 3'- -GCGGG--ACCACaUGG-UCCuuuaaGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 27534 | 0.68 | 0.568676 |
Target: 5'- --aCCUGGcUGUuCCAGGGc--UCCCCg -3' miRNA: 3'- gcgGGACC-ACAuGGUCCUuuaAGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 2106 | 0.68 | 0.568676 |
Target: 5'- uGCCCUGGgacucuCCuGGAGAUucaggaUCCUCa -3' miRNA: 3'- gCGGGACCacau--GGuCCUUUA------AGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 17793 | 0.7 | 0.449978 |
Target: 5'- aCGgCCUGGUugGCCAGGuccaccaCCCCg -3' miRNA: 3'- -GCgGGACCAcaUGGUCCuuuaa--GGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 32395 | 0.7 | 0.449978 |
Target: 5'- gGCCUUGGUG-GCCGuguuGGAGAUgaguuUUCCCg -3' miRNA: 3'- gCGGGACCACaUGGU----CCUUUA-----AGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 12863 | 0.71 | 0.400651 |
Target: 5'- gCGCCCUGG---GCCAGGAcga--CCCg -3' miRNA: 3'- -GCGGGACCacaUGGUCCUuuaagGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 9427 | 0.71 | 0.372758 |
Target: 5'- gCGCaucuCCaGGUG-GCCGGGGGggUCCCCg -3' miRNA: 3'- -GCG----GGaCCACaUGGUCCUUuaAGGGG- -5' |
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421 | 3' | -53.8 | AC_000011.1 | + | 26641 | 1.13 | 0.000434 |
Target: 5'- cCGCCCUGGUGUACCAGGAAAUUCCCCa -3' miRNA: 3'- -GCGGGACCACAUGGUCCUUUAAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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