Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
421 | 5' | -54.6 | AC_000011.1 | + | 24606 | 0.67 | 0.618832 |
Target: 5'- aCGUGCUGCacaccaccCUGCGcggGGAgGCCCGGc -3' miRNA: 3'- gGCAUGAUGaa------GGCGC---UCUgCGGGUC- -5' |
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421 | 5' | -54.6 | AC_000011.1 | + | 24967 | 0.7 | 0.416938 |
Target: 5'- uUCGUGCcGCUgaccuUCCGCGAG-UGCCCc- -3' miRNA: 3'- -GGCAUGaUGA-----AGGCGCUCuGCGGGuc -5' |
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421 | 5' | -54.6 | AC_000011.1 | + | 7516 | 0.72 | 0.336127 |
Target: 5'- cCCGUGCUGCU----CGAG-CGCCCAGu -3' miRNA: 3'- -GGCAUGAUGAaggcGCUCuGCGGGUC- -5' |
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421 | 5' | -54.6 | AC_000011.1 | + | 15570 | 0.74 | 0.258419 |
Target: 5'- cCCGUGCgcgugcgcgggcACUUCCGCGcucccugGGGCGCCCu- -3' miRNA: 3'- -GGCAUGa-----------UGAAGGCGC-------UCUGCGGGuc -5' |
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421 | 5' | -54.6 | AC_000011.1 | + | 21937 | 0.74 | 0.247101 |
Target: 5'- gUCGguccACaGCUUCCGCGcaguugcaGGGCGCCCAGc -3' miRNA: 3'- -GGCa---UGaUGAAGGCGC--------UCUGCGGGUC- -5' |
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421 | 5' | -54.6 | AC_000011.1 | + | 26676 | 1.12 | 0.000505 |
Target: 5'- aCCGUACUACUUCCGCGAGACGCCCAGg -3' miRNA: 3'- -GGCAUGAUGAAGGCGCUCUGCGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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