Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 17071 | 0.67 | 0.393678 |
|
Target: 5'- gCGGCcgCG-CACCUcuGACC-CUGCCGc -3' miRNA: 3'- -GCCGaaGCuGUGGAc-CUGGuGACGGC- -5' |
|||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 15948 | 0.68 | 0.375647 |
|
Target: 5'- cCGGCgcUGGCGCCUGaaGCCGCgcgucugGCCGc -3' miRNA: 3'- -GCCGaaGCUGUGGACc-UGGUGa------CGGC- -5' |
|||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 24783 | 0.68 | 0.366843 |
|
Target: 5'- cCGGgUUCGACgagcgcaccaccGCCUcGGACCug-GCCGa -3' miRNA: 3'- -GCCgAAGCUG------------UGGA-CCUGGugaCGGC- -5' |
|||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 16008 | 0.69 | 0.317058 |
|
Target: 5'- gGGCgg-GACAUgCUGGcgaugGCCGCUGCCGc -3' miRNA: 3'- gCCGaagCUGUG-GACC-----UGGUGACGGC- -5' |
|||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 17027 | 0.69 | 0.29414 |
|
Target: 5'- gCGGCggCGGCugCUGGuaugACCGCgguagaagcgcgUGCCGc -3' miRNA: 3'- -GCCGaaGCUGugGACC----UGGUG------------ACGGC- -5' |
|||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 17838 | 0.7 | 0.245092 |
|
Target: 5'- cCGGCgggCGGCACCgGGuCCAggcggcuguugauCUGCCGc -3' miRNA: 3'- -GCCGaa-GCUGUGGaCCuGGU-------------GACGGC- -5' |
|||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 14917 | 0.74 | 0.14292 |
|
Target: 5'- uCGGUUUCaGcCGCCUcGGCCGCUGCCa -3' miRNA: 3'- -GCCGAAG-CuGUGGAcCUGGUGACGGc -5' |
|||||||
| 422 | 5' | -57.9 | AC_000011.1 | + | 27127 | 1.08 | 0.000429 |
|
Target: 5'- uCGGCUUCGACACCUGGACCACUGCCGc -3' miRNA: 3'- -GCCGAAGCUGUGGACCUGGUGACGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home