Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
423 | 3' | -53.9 | AC_000011.1 | + | 36081 | 1.1 | 0.00047 |
Target: 5'- cAGCAGCACACAACAGGCGCAAGAGUCa -3' miRNA: 3'- -UCGUCGUGUGUUGUCCGCGUUCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 30613 | 0.66 | 0.641419 |
Target: 5'- gGGCAGCcggagcCGCuuCAGGUGgaaGGGGGUCu -3' miRNA: 3'- -UCGUCGu-----GUGuuGUCCGCg--UUCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 10144 | 0.66 | 0.606377 |
Target: 5'- uGCGGCG-GCGGCuGGCGguAGAG-Cg -3' miRNA: 3'- uCGUCGUgUGUUGuCCGCguUCUCaG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 6691 | 0.66 | 0.606377 |
Target: 5'- cGUAGuCAUACAGCucGUGCGAGGGg- -3' miRNA: 3'- uCGUC-GUGUGUUGucCGCGUUCUCag -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 16276 | 0.67 | 0.560049 |
Target: 5'- cGGCGGCGCguGCAguggcGCGGGCGgAAG-GUg -3' miRNA: 3'- -UCGUCGUG--UGU-----UGUCCGCgUUCuCAg -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 10178 | 0.67 | 0.560049 |
Target: 5'- cGGUGGCGgggGCGcCGGGCGCGAG-GUCc -3' miRNA: 3'- -UCGUCGUg--UGUuGUCCGCGUUCuCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 21904 | 0.67 | 0.560049 |
Target: 5'- cAGCAGUuuGgGCAGCgGGGUGUcggggaAGGAGUCg -3' miRNA: 3'- -UCGUCG--UgUGUUG-UCCGCG------UUCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 6852 | 0.67 | 0.525952 |
Target: 5'- gAGUcGCGgAUGAaguGGGCGUAGGAGUCu -3' miRNA: 3'- -UCGuCGUgUGUUg--UCCGCGUUCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 7647 | 0.68 | 0.514756 |
Target: 5'- cGGgGGUgACGCAGuagaAGGUGCGGGGGUCc -3' miRNA: 3'- -UCgUCG-UGUGUUg---UCCGCGUUCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 17642 | 0.73 | 0.257008 |
Target: 5'- cAGCAcCACAgGGCAGGCGCuGAGGGa- -3' miRNA: 3'- -UCGUcGUGUgUUGUCCGCG-UUCUCag -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 8262 | 0.7 | 0.374626 |
Target: 5'- cGGCGGCGCGCGguugacuuGCAGgaguuuuuccagggcGCGCGGGAGg- -3' miRNA: 3'- -UCGUCGUGUGU--------UGUC---------------CGCGUUCUCag -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 5223 | 0.68 | 0.492666 |
Target: 5'- gGGguGCGCGCcgGGCuGGGCGCuugcGAGGGUg -3' miRNA: 3'- -UCguCGUGUG--UUG-UCCGCG----UUCUCAg -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 8457 | 0.68 | 0.492666 |
Target: 5'- cGGCGGCgaggacGCGCGcCGGGCGgCAGGGG-Cg -3' miRNA: 3'- -UCGUCG------UGUGUuGUCCGC-GUUCUCaG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 15835 | 0.68 | 0.503659 |
Target: 5'- uGCuGCGCAgGGcCAGGCGCAcGGGa- -3' miRNA: 3'- uCGuCGUGUgUU-GUCCGCGUuCUCag -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 22376 | 0.68 | 0.503659 |
Target: 5'- cGGCGucguGCACGCAGCAGcGCGCGuc-GUUg -3' miRNA: 3'- -UCGU----CGUGUGUUGUC-CGCGUucuCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 16954 | 0.66 | 0.628563 |
Target: 5'- uGCAGCGCGuaguugggcauCAGCAGGCuggccGCGccguacuugcgccGGGGUCu -3' miRNA: 3'- uCGUCGUGU-----------GUUGUCCG-----CGU-------------UCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 24996 | 0.74 | 0.200038 |
Target: 5'- gGGCAGCGCGgAGCAGGUggcggGCAGGAuUCc -3' miRNA: 3'- -UCGUCGUGUgUUGUCCG-----CGUUCUcAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 20791 | 0.72 | 0.301944 |
Target: 5'- uGGCccuGGCGCAUggUGGGCGCGAG-GUa -3' miRNA: 3'- -UCG---UCGUGUGuuGUCCGCGUUCuCAg -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 35041 | 0.71 | 0.335132 |
Target: 5'- uGGCuGUuauuuuccaccaACACAGCGGGgGCGAGAGg- -3' miRNA: 3'- -UCGuCG------------UGUGUUGUCCgCGUUCUCag -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 17107 | 0.69 | 0.415158 |
Target: 5'- cGGCGGUACACucuccgcaccaGGGCGgCAGGGGUg -3' miRNA: 3'- -UCGUCGUGUGuug--------UCCGC-GUUCUCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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